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John Wu

dblp:00/4064 · DBLP profile ↗
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8ranked-venue papers
2as first author
5since 2021 · last 2026
0000-0001-8370-7738ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 4 · 1 first-author · 3 since 2021Applied, interdisciplinary, general and emerging computing · 3 · 2 since 2021Systems, architecture and hardware · 1 · 1 first-authorDatabases, data management, data science and information retrieval · 1 · 1 since 2021Human-computer interaction and ubiquitous computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Medical and health informatics · 100%
Artificial intelligence
1 paper
Trustworthy machine learning · 77% Language models and text generation · 23%
Databases, data mining, and information retrieval
1 paper
Machine learning and data management · 100%

Topics — the 5 heaviest of 7, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics
electronic health records
0.912025
MEDS: Building Models and Tools in a Reproducible Health AI Ecosystem · KDD (2) 2025
Machine learning › Trustworthy machine learning
interpretability
0.812024
Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning · EMNLP 2024
Medical and health informatics › clinical informatics › clinical coding
automated ICD coding
0.812024
Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning · EMNLP 2024
Medical and health informatics
interpretability
0.812024
Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning · EMNLP 2024
Natural language and speech › Language models and text generation
large language model
0.212024
Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning · EMNLP 2024

Methods — techniques the papers use, named apart from their topics

data standardization · 1.7benchmarking · 1.7sparse representation · 1.5dictionary learning · 1.5
YearPublicationVenuePosition
2026 Making Conformal Predictors Robust in Healthcare Settings: a Case Study on EEG Classification
Arjun Chatterjee, Sayeed Sajjad Razin, John Wu, Siddhartha Laghuvarapu, Jathurshan Pradeepkumar, Jimeng Sun 0001
AIME (1)3
2025 RHealth: A R Toolkit for Deep Learning in Healthcare
abstract
Machine learning for electronic health records (EHR) is advancing rapidly and already underpins risk stratification, readmission and mortality prediction, and decision support, yet reliable translation still stalls on fragmented data pipelines, inconsistent medical-code handling, and hard-to-reproduce eval-uation-barriers that especially hinder R-centric clinical teams. Despite impressive methodological gains in temporal modeling, attention mechanisms, and strong classical baselines, most turnkey toolchains live in Python; as a result, many healthcare researchers and clinical data scientists working in R lack a single, integrated path from raw multi-table EHR to calibrated, auditable models. We address this gap with RHealth, an open-source, R-native toolkit that plays the role of an end-to-end conductor: from data harmonization and medical-code normal-ization to task specification, model training, and standardized reporting. Concretely, RHealth provides adapters for widely used public datasets (e.g., MIMIC-III/IV, eICU), utilities to traverse and map ICD-9/10 and CCS codes, task templates for common outcomes (mortality, 30-day readmission, length of stay), and a modeling stack that-at this development stage-supports standard recurrent baselines (e.g., RNN) and offers an extensible interface for user-defined architectures under active development, all evaluated with reproducible splits, AUROC/AUPRC, and cali-bration diagnostics. By packaging the full pipeline-from data to evaluation granularity-into modular, composable components, RHealth lowers the entry barrier for R users, reduces “glue code,” and promotes transparent, people-centric experimentation that can also serve as a trustworthy upstream substrate for LLM-enabled applications. To our knowledge, it is among the first comprehensive, integrated deep-learning toolkits for EHR in the R ecosystem. The code and documentation will be released after the double-blind review process.
Ji Song, Zhixia Ren, Zhenbang Wu, John Wu, Chaoqi Yang, Yinghao Zhu, Wen Tang 0001, Jimeng Sun 0001, Ewen M. Harrison, Liantao Ma
BIBM4
2025 MEDS: Building Models and Tools in a Reproducible Health AI Ecosystem
abstract
Health AI suffers from a systemic reproducibility crisis that irreparably hinders research across both academia and industry [4,5].One key tool poised to solve this crisis is the Medical Event Data Standard (MEDS), a comprehensive data format and open-source ecosystem designed to enhance reproducibility and interoperability of AI research using longitudinal Electronic Health Records (EHR) [6].Currently adopted by over 15 institutions globally, MEDS encompasses various open-source tools, published models, and data processing pipelines, enabling streamlined model development and robust benchmarking.In this tutorial, participants will gain key hands-on experience in working with the MEDS format to perform efficient, reproducible, state-of-the-art AI research over real health data.Participants will transform data into the MEDS format, preprocess data, build predictive models, and contribute to the decentralized MEDS-DEV benchmarking platform.Interactive exercises using Jupyter notebooks will provide hands-on experience and practical skills for reproducible health AI research.Attendees will leave equipped
Matthew B. A. McDermott, Justin Xu, Teya S. Bergamaschi, Hyewon Jeong, Simon A. Lee, Nassim Oufattole, Patrick Rockenschaub, Kamile Stankeviciute, Ethan Steinberg, Jimeng Sun 0001, Robin Van De Water, Michael Wornow, John Wu, Zhenbang Wu
KDD (2)13
2024 Beyond Label Attention: Transparency in Language Models for Automated Medical Coding via Dictionary Learning
abstract
Medical coding, the translation of unstructured clinical text into standardized medical codes, is a crucial but time-consuming healthcare practice. Though large language models (LLM) could automate the coding process and improve the efficiency of such tasks, interpretability remains paramount for maintaining patient trust. Current efforts in interpretability of medical coding applications rely heavily on label attention mechanisms, which often leads to the highlighting of extraneous tokens irrelevant to the ICD code. To facilitate accurate interpretability in medical language models, this paper leverages dictionary learning that can efficiently extract sparsely activated representations from dense language model embeddings in superposition. Compared with common label attention mechanisms, our model goes beyond token-level representations by building an interpretable dictionary which enhances the mechanistic-based explanations for each ICD code prediction, even when the highlighted tokens are medically irrelevant. We show that dictionary features are human interpretable, can elucidate the hidden meanings of upwards of 90% of medically irrelevant tokens, and steer model behavior.
John Wu, Jimeng Sun 0001
EMNLP1
2021 On the classification of bug reports to improve bug localization
Fan Fang, John Wu, Xin Ye 0003, Wajdi Aljedaani, Mohamed Wiem Mkaouer
Soft Comput.2
2018 Bug Report Classification Using LSTM Architecture for More Accurate Software Defect Locating
abstract
Recently many information retrieval (IR)-based approaches have been proposed to help locate software defects automatically by using information from bug report contents. However, some bug reports that do not semantically related to the relevant code are not helpful to IR-based systems. Running an IR-based system on these reports may produce false positives. In this paper, we propose a classification model for classifying a bug report as either helpful or unhelpful using a LSTM-network. By filtering our unhelpful reports before running an IR-based bug locating system, our approach helps reduce false positives and improve the ranking performance. We test our model over 9,000 bug reports from three software projects. The evaluation result shows that our model helps improve a state-of-the-art IR-based system's ranking performance under a trade-off between the precision and the recall. Our comparison experiments show that the LSTM-network achieves the best trade-off between precision and recall than other classification models including CNN, multilayer perceptron, and a simple baseline approach that classifies a bug report based its length. In the situation that precision is more important than recall, our classification model helps for bug locating.
Xin Ye 0003, Fan Fang, John Wu, Razvan C. Bunescu, Chang Liu 0028
ICMLA3
2001 Agent-based schedule validation and verification
abstract
An agent architecture called ABPEM (Agent-Based Planning, Execution and Monitoring) is presented that utilizes a dynamically reconfigurable data-flow network for planning, execution and monitoring on large-scale multi-information-source systems. This approach is applicable to a broad range of systems, such as transportation, logistics, manufacturing and information-gathering systems, especially where the domain is characterized by dynamic environments that change during the course of execution. It is currently being applied to the problem of validating and verifying airlift cargo schedules. Given an airlift cargo mission schedule, relevant data is identified and collected and then used to (a) validate the future scheduled missions, and (b) verify the completion of executing missions (or reporting unexpected results).
John Budenske, Jim Newhouse, Jordan Bonney, John Wu
SMC4
1994 A Mismatch Independent DNL Pipelined Analog to Digital Converter
abstract
A pipelined ADC based upon a new error correction algorithm is presented. With a 10% mismatch in capacitor sizes, the proposed ADC achieves a simulated DNL (differential non-linearity) of 9 bits can be-realized. Spice level simulations based upon extracted layout of the chip designed in a 1.2 /spl mu/m CMOS process show that 3.3 MSamples/s can be resolved at 20 mW per bit.>
John Wu, Bosco H. Leung, Sehat Sutarja
ISCAS1