Our main result is a succinct counterpoint to Courcelle's meta-theorem as follows: every cw-nontrivial monadic second-order (MSO) property is either NP-hard or coNP-hard over graphs given by succinct representations. Succint representations are Boolean circuits computing the adjacency relation. Cw-nontrivial properties are those which have infinitely many models and infinitely many countermodels with bounded cliquewidth. Moreover, we explore what happens when the cw-nontriviality condition is dropped and show that, under a reasonable complexity assumption, the previous dichotomy fails, even for questions expressible in first-order logic.

International audience

Different models have been proposed to understand natural phenomena at the molecular scale from a computational point of view. Oritatami systems are a model of molecular co-transcriptional folding: the transcript (the "molecule") folds as it is synthesized according to a local energy optimisation process, in a similar way to how actual biomolecules such as RNA fold into complex shapes and functions. We introduce a new model, called turedo, which is a self-avoiding Turing machine on the plane that evolves by marking visited positions and that can only move to unmarked positions. Any oritatami can be seen as a particular turedo. We show that any turedo with lookup radius 1 can conversely be simulated by an oritatami, using a universal bead type set. Our notion of simulation is strong enough to preserve the geometrical and dynamical features of these models up to a constant spatio-temporal rescaling (as in intrinsic simulation). As a consequence, turedo can be used as a readable oritatami "higher-level" programming language to build readily oritatami "smart robots", using our explicit simulation result as a compiler. As an application of our simulation result, we prove two new complexity results on the (infinite) limit configurations of oritatami systems (and radius-1 turedos), assembled from a finite seed configuration. First, we show that such limit configurations can embed any recursively enumerable set, and are thus exactly as complex as aTAM limit configurations. Second, we characterize the possible densities of occupied positions in such limit configurations: they are exactly the Π₂-computable numbers between 0 and 1. We also show that all such limit densities can be produced by one single oritatami system, just by changing the finite seed configuration. None of these results is implied by previous constructions of oritatami embedding tag systems or 1D cellular automata, which produce only computable limit configurations with constrained density.

We study qualitative properties of two-dimensional freezing cellular automata with a binary state set initialized on a random configuration. If the automaton is also monotone, the setting is equivalent to bootstrap percolation. We explore the extent to which monotonicity constrains the possible asymptotic dynamics by proving two results that do not hold in the subclass of monotone automata. First, it is undecidable whether the automaton almost surely fills the space when initialized on a Bernoulli random configuration with density p, for some/all 0<p<1. Second, there exists an automaton whose space-filling property depends on p in a non-monotone way.

We prove general complexity lower bounds on automata networks, in the style of Rice’s theorem, but in the computable world. Our main result is that testing any fixed first-order property on the dynamics of an automata network is either trivial, or NP-hard, or coNP-hard. Moreover, there exist such properties that are arbitrarily high in the polynomial-time hierarchy. We also prove that testing a first-order property given as input on an automata network (also part of the input) is PSPACE-hard. Besides, we show that, under a natural effectiveness condition, any nontrivial property of the limit set of a nondeterministic network is PSPACE-hard. We also show that it is PSPACE-hard to separate deterministic networks with a very high and a very low number of limit configurations; however, the problem of deciding whether the number of limit configurations is maximal up to a polynomial quantity belongs to the polynomial-time hierarchy.

We prove a negative result on the power of a model of algorithmic self-assembly for which finding general techniques and results has been notoriously difficult. Specifically, we prove that Winfree's abstract Tile Assembly Model is not intrinsically universal when restricted to use noncooperative tile binding. This stands in stark contrast to the recent result that the abstract Tile Assembly Model is indeed intrinsically universal when cooperative binding is used (FOCS 2012). Noncooperative self-assembly, also known as “temperature 1”, is where all tiles bind to each other if they match on at least one side. On the other hand, cooperative self-assembly requires that some tiles bind on at least two sides. Our result shows that the change from non-cooperative to cooperative binding qualitatively improves the range of dynamics and behaviors found in these models of nanoscale self-assembly. The result holds in both two and three dimensions; the latter being quite surprising given that three-dimensional noncooperative tile assembly systems simulate Turing machines. This shows that Turing universal behavior in self-assembly does not imply the ability to simulate all algorithmic self-assembly processes. In addition to the negative result, we exhibit a three-dimensional noncooperative self-assembly tile set capable of simulating any two-dimensional noncooperative self-assembly system. This tile set implies that, in a restricted sense, non-cooperative self-assembly is intrinsically universal for itself.

This paper introduces a simple formalism for dealing with deterministic, non-deterministic and stochastic cellular automata in an unified and composable manner. This formalism allows for local probabilistic correlations, a feature which is not presen

Cellular automata (CA) are dynamical systems defined by a finite local rule but they are studied for their global dynamics. They can exhibit a wide range of complex behaviours and a celebrated result is the existence of (intrinsically) universal CA, that is CA able to fully simulate any other CA. In this paper, we show that the asymptotic density of universal cellular automata is 1 in several families of CA defined by local symmetries. We extend results reviously established for captive cellular automata in two significant ways. First, our results apply to well-known families of CA (e.g. the family of outer-totalistic CA containing the Game of Life) and, second, we obtain such density results with both increasing number of states and increasing neighbourhood. Moreover, thanks to universality-preserving encodings, we show that the universality problem remains undecidable in some of those families.