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Anmol M. Kiran

dblp:08/8322 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2010
0000-0003-2680-2303ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 62% Computational science and engineering · 38%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Computational science and engineering › data infrastructure
database
0.112010
DARNED: a DAtabase of RNa EDiting in humans · Bioinform. 2010
Bioinformatics and computational biology › transcriptomics
RNA editing
0.112010
DARNED: a DAtabase of RNa EDiting in humans · Bioinform. 2010
Bioinformatics and computational biology
genome annotation
0.012010
DARNED: a DAtabase of RNa EDiting in humans · Bioinform. 2010
Bioinformatics and computational biology › transcriptomics › epitranscriptomics
RNA editing detection
0.012010
DARNED: a DAtabase of RNa EDiting in humans · Bioinform. 2010
YearPublicationVenuePosition
2010 DARNED: a DAtabase of RNa EDiting in humans
abstract
MOTIVATION: RNA editing is a phenomenon, which is responsible for the alteration of particular nucleotides in RNA sequences relative to their genomic templates. Recently, a large number of RNA editing instances in humans have been identified using bioinformatic screens and high-throughput experimental investigations utilizing next-generation sequencing technologies. However, the available data on RNA editing are not uniform and difficult to access. RESULTS: Here, we describe a new database DARNED (DAtabase of RNa EDiting) that provides centralized access to available published data related to RNA editing. RNA editing locations are mapped on the reference human genome. The current release of the database contains information on approximately 42 000 human genome coordinates corresponding to RNA locations that undergo RNA editing, mostly involving adenosine-to-inosine (A-to-I) substitutions. The data can be queried using a range of genomic coordinates, their corresponding functional localization in RNA molecules [Exons, Introns, CoDing Sequence (CDS) and UnTranslated Regions (UTRs)] and information regarding tissue/organ/cell sources where RNA editing has been observed. It is also possible to obtain RNA editing information for a specific gene or an RNA molecule using corresponding accession numbers. Search results provide information on the number of expressed sequence tags (ESTs) supporting edited and genomic bases, functional localization of RNA editing and existence of known single nucleotide polymorphisms (SNPs). Editing data can be explored in UCSC and Ensembl genome browsers, in conjunction with additional data provided by these popular genome browsers. DARNED has been designed for researchers seeking information on RNA editing and for the developers of novel algorithms for its prediction. AVAILABILITY: DARNED is accessible at http://darned.ucc.ie
Anmol M. Kiran, Pavel V. Baranov
Bioinform.1