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Rafael Ayala

dblp:10/5387 · DBLP profile ↗
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11ranked-venue papers
6as first author
1since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Theory of computation · 5 · 5 first-authorArtificial intelligence and machine learning · 3 · 1 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 3

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
3 papers
Bioinformatics and computational biology · 100%

Topics — the 8 heaviest of 10, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
metabolomics
0.722019
pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra · Bioinform. 2019
MWASTools: an R/bioconductor package for metabolome-wide association studies · Bioinform. 2018
Bioinformatics and computational biology › metagenomics
binning
0.412019
pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra · Bioinform. 2019
Bioinformatics and computational biology › metabolomics
metabolic profiling
0.412019
pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra · Bioinform. 2019
Bioinformatics and computational biology › metabolomics
metabolite identification
0.312018
MWASTools: an R/bioconductor package for metabolome-wide association studies · Bioinform. 2018
Bioinformatics and computational biology › systems bioinformatics › pathway analysis
metabolic pathway analysis
0.312017
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways · Bioinform. 2017
Bioinformatics and computational biology › systems bioinformatics › pathway analysis
signaling pathway analysis
0.312017
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways · Bioinform. 2017
Bioinformatics and computational biology
systems biology
0.312017
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways · Bioinform. 2017
Bioinformatics and computational biology › network bioinformatics › biological network analysis
network topology analysis
0.112017
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways · Bioinform. 2017

Methods — techniques the papers use, named apart from their topics

statistical recoupling of variables · 0.4binning algorithm · 0.4statistical total correlation spectroscopy · 0.3partial correlation · 0.3generalized linear model · 0.3network analysis · 0.3KEGG pathway integration · 0.3
YearPublicationVenuePosition
2025 Refining satellite trajectories with celestial body features using neural networks
abstract
Satellite orbit propagation involves predicting a satellite’s future position and velocity based on initial conditions. Traditional physical models, such as SGDP4, simplify the forces that act on the satellite to achieve high computational efficiency at the cost of reduced prediction accuracy, especially over longer time intervals where error accumulates. More sophisticated models like HPOP offer improved accuracy at the cost of high prediction times, rendering them unusable for realtime long-term predictions. Recent advancements have introduced machine learning techniques to refine these predictions and reduce errors. However, they often lack an analysis of model design choices, such as input feature selection and architectural configurations. Existing models do not incorporate features related to the state of celestial bodies, such as the positions of the Moon or Sun, which can influence the satellite’s trajectory. This paper proposes a novel model that integrates such features at both the initial time and throughout the prediction interval, leveraging their potential impact on the orbit of the satellite. The model is based on a neural network architecture employing GRU layers for encoding sequential data about the celestial conditions. Our results demonstrate that the inclusion of these sequential features significantly reduces prediction errors. Additionally, we have evaluated a variety of design choices such as independent sub-models for specific spatial coordinates and time intervals, further enhancing performance. These innovations lead to substantial improvements in both short- and long-term orbit predictions, providing a more robust and accurate alternative for satellite orbit propagation. • Hybrid model integrates SGDP4 with neural networks for improved orbit predictions. • Celestial body positions included as sequences are key features to enhance accuracy. • Separate models per coordinate and time window boost overall predictive performance. • Improved long-term forecast (10h+) while matching or exceeding short-term accuracy.
José Calderón, Daniel Ayala Hernández, Rafael Ayala, Luis Valencia-Cabrera, Inma Hernández, David Ruiz 0001
Expert Syst. Appl.3
2019 pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra
abstract
MOTIVATION: Data processing is a key bottleneck for 1H NMR-based metabolic profiling of complex biological mixtures, such as biofluids. These spectra typically contain several thousands of signals, corresponding to possibly few hundreds of metabolites. A number of binning-based methods have been proposed to reduce the dimensionality of 1 D 1H NMR datasets, including statistical recoupling of variables (SRV). Here, we introduce a new binning method, named JBA ("pJRES Binning Algorithm"), which aims to extend the applicability of SRV to pJRES spectra. RESULTS: The performance of JBA is comprehensively evaluated using 617 plasma 1H NMR spectra from the FGENTCARD cohort. The results presented here show that JBA exhibits higher sensitivity than SRV to detect peaks from low-abundance metabolites. In addition, JBA allows a more efficient removal of spectral variables corresponding to pure electronic noise, and this has a positive impact on multivariate model building. AVAILABILITY AND IMPLEMENTATION: The algorithm is implemented using the MWASTools R/Bioconductor package. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Nikita Harvey, Beatriz Jiménez, Kazuhiro Sonomura, Taka-Aki Sato, Fumihiko Matsuda, Pierre A. Zalloua, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Bioinform.2
2018 MWASTools: an R/bioconductor package for metabolome-wide association studies
abstract
Summary: MWASTools is an R package designed to provide an integrated pipeline to analyse metabonomic data in large-scale epidemiological studies. Key functionalities of our package include: quality control analysis; metabolome-wide association analysis using various models (partial correlations, generalized linear models); visualization of statistical outcomes; metabolite assignment using statistical total correlation spectroscopy (STOCSY); and biological interpretation of metabolome-wide association studies results. Availability and implementation: The MWASTools R package is implemented in R (version > =3.4) and is available from Bioconductor: https://bioconductor.org/packages/MWASTools/. Contact: [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online.
Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana Luísa Neves, Maryam Anwar, Enrico Petretto, Costanza Emanueli, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Bioinform.3
2017 MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways
abstract
Summary: MetaboSignal is an R package that allows merging metabolic and signaling pathways reported in the Kyoto Encyclopaedia of Genes and Genomes (KEGG). It is a network-based approach designed to navigate through topological relationships between genes (signaling- or metabolic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape of metabolic phenotypes. Availability and Implementation: MetaboSignal is available from Bioconductor: https://bioconductor.org/packages/MetaboSignal/. Contact: [email protected] . Supplementary information: Supplementary data are available at Bioinformatics online.
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana Luísa Neves, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Bioinform.2
2012 Perfect discrete Morse functions on 2-complexes
Rafael Ayala, Desamparados Fernández-Ternero, José Antonio Vilches
Pattern Recognit. Lett.1
2011 The number of excellent discrete Morse functions on graphs
Rafael Ayala, Desamparados Fernández-Ternero, José Antonio Vilches
Discret. Appl. Math.1
2009 The Number of Excellent Discrete Morse Functions on Graphs
Rafael Ayala, Desamparados Fernández-Ternero, José Antonio Vilches
CTW1
2004 Digital homotopy with obstacles
Rafael Ayala, Eladio Domínguez, Angel R. Francés, Antonio Quintero
Discret. Appl. Math.1
2003 Homotopy in digital spaces
Rafael Ayala, Eladio Domínguez, Angel R. Francés, Antonio Quintero
Discret. Appl. Math.1
2002 Weak lighting functions and strong 26-surfaces
Rafael Ayala, Eladio Domínguez, Angel R. Francés, Antonio Quintero
Theor. Comput. Sci.1
2001 A Digital Index Theorem
abstract
This paper is devoted to state and prove a Digital Index Theorem for digital (n - 1)-manifolds in a digital space (Rn, f), where f belongs to a large family of lighting functions on the standard cubical decomposition Rn of the n-dimensional Euclidean space. As an immediate consequence we obtain the corresponding theorems for all (α, β)-surfaces of Kong–Roscoe, with α, β ∈ {6, 18, 26} and (α, β) ≠ (6, 6), (18, 26), (26, 26), as well as for the strong 26-surfaces of Bertrand–Malgouyres.
Eladio Domínguez, Angel R. Francés, Rafael Ayala, Antonio Quintero
Int. J. Pattern Recognit. Artif. Intell.3