Furui Liu

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46ranked-venue papers
7as first author
39since 2021 · last 2026
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 31 · 3 first-author · 27 since 2021Graphics, computer vision, multimedia, augmented reality and games · 15 · 15 since 2021Applied, interdisciplinary, general and emerging computing · 10 · 3 first-author · 8 since 2021Databases, data management, data science and information retrieval · 9 · 1 first-author · 7 since 2021Computer networks · 1 · 1 since 2021
YearPublicationVenuePosition
2026 DSAP: Enhancing Generalization in Goal-Conditioned Reinforcement Learning
abstract
Goal-conditioned Reinforcement Learning (RL) is a promising direction for training agents capable of tackling a variety of tasks. However, generalizing to new goals in different environments remains a central challenge for goal-conditioned RL agents. Existing methods often rely on state abstraction, which involves learning abstracted state representations by excluding irrelevant features, to improve generalization. Despite their success in simplified settings, these methods often fail to generalize effectively to realistic environments with varied goals. In this work, we propose to enhance generalization through state abstraction from the perspective of causal inference. We hypothesize that the generalization gap arises in part due to unobserved confounders: latent variables that simultaneously influence both the global and goal states. To address this, we introduce Deconfounded State Abstraction for Policy learning (DSAP), a novel framework that mitigates backdoor confounding by employing a learned causal graph as a *proxy* for the hidden confounders. We provide theoretical analysis demonstrating that DSAP improves both the learning process and the generalization capability of goal-conditioned policies. Extensive experiments across different settings of multiple benchmarks show that our method significantly outperforms existing methods.
Kaiyan Zhao, Yan Li 0122, Furui Liu, Leong Hou U
AAAI5
2026 AIPO: Adaptive Information Guided Token-Level Reinforcement Learning for Large Language Model Reasoning
abstract
Reinforcement Learning with Verifiable Rewards (RLVR) improves the reasoning capability of Large Language Models (LLMs). Current RLVR trains LLMs on all generated tokens, rather than exploring which tokens actually contribute to reasoning. We propose AIPO(Adaptive–Information Policy Optimization), which focuses updates on those decisive tokens discovered on the fly. AIPO estimates each hidden state’s mutual information to score tokens. Policy gradients are then computed only on these critical tokens, using an advantage that blends information gain and verifiable correctness. To improve the efficiency of mutual-information estimation, AIPO adopts a Random–Fourier approximation of the Hilbert–Schmidt Independence Criterion. Across five math and science benchmarks, AIPO yields up to +20% accuracy over strong RLVR baselines while updating merely 10% of tokens, demonstrating superior efficiency and effectiveness. Our findings highlight the importance of information–driven token selection for efficient and effective reinforcement learning of LLM reasoning.
Bin Chen 0006, Hongfei Ye, Wenxi Liu, Yu Zhang 0296, Furui Liu
ACL (1)6
2026 Geometry-Insensitive RPN Prototypes for Domain Adaptive 3D Object Detection
abstract
The region proposal network (RPN) plays a critical role in object detection for a two-stage domain adaptive 3D object detector. However, current methods usually minimize the disparity between source and target domains by reducing the bias in intrinsic geometric information or by undertaking feature alignment according to the geometric disparity but ignore the transferability of RPN-related features and neglect the discriminability between foreground and background, resulting in generating low-quality RPN proposals. Thus, we propose a novel domain adaptation method to distinguish the discriminability between foreground and background. It could implicitly avoid the geometric disparity of objects in feature alignment. Specifically, we first construct learnable and geometry-insensitive foreground RPN prototype and background RPN prototype. Then, we enforce the foreground RPN features and background RPN features to align with the foreground RPN prototype and background RPN prototype, respectively. By this way, the distributional discrepancy is effectively decreased and the adaptability is promoted for existing 3D detectors. We demonstrate that our approach achieves promising results compared with other domain adaptation works on multiple cross-domain detection scenarios.
Jiazhong Chen, Dakai Ren, Zian Fu, Furui Liu
ACM Trans. Multim. Comput. Commun. Appl.5
2025 DiTAC: Discrete Teamwork Abstraction for Ad Hoc Collaboration
abstract
Training autonomous agents to collaborate with unknown teammates in cooperative multi-agent environments remains a fundamental challenge in ad hoc teamwork research. Conventional approaches rely heavily on online interactions with arbitrary teammates under the assumption of full observability. However, in real-world scenarios, teammate policies are often inaccessible, making historical trajectory rollouts a more practical alternative. We propose DiTAC, a method that learns discrete teamwork abstractions for ad hoc collaboration by automatically extracting latent cooperation patterns from short trajectory segments and adapting effectively to diverse teammate behaviors. To mitigate the out-of-distribution challenge, we constrain learned representations within a discrete code-book. Furthermore, we employ a masked bidirectional transformer architecture to infer teammate behaviors from local observations, thereby relaxing the full observability assumption. Empirical results demonstrate that DiTAC significantly outperforms existing baselines and its variants across widely-used ad hoc teamwork tasks.
Jing Wang 0055, Pengjie Gu, Mengchen Zhao, Guangyong Chen, Furui Liu, Pheng-Ann Heng
ECAI5
2025 Dual Ensembled Multiagent Q-Learning with Hypernet Regularizer
Yaodong Yang 0002, Guangyong Chen, Hongyao Tang, Furui Liu, Danruo Deng, Pheng-Ann Heng
AAMAS4
2025 scDCT: a conditional diffusion-based deep learning model for high-fidelity single-cell cross-modality translation
abstract
Single-cell multi-omics technologies enable comprehensive molecular profiling, offering insights into cellular heterogeneity and biological mechanisms. However, current cross-modality translation methods struggle with high-dimensional, noisy, and sparse single-cell data. We propose single-cell Diffusion models for Cross-modality Translation (scDCT), a probabilistic framework for bidirectional cross-modality translation in single-cell data, including single-cell RNA sequencing, single-cell assay for transposase-accessible chromatin sequencing, and protein expression. scDCT integrates modality-specific autoencoders with conditional denoising diffusion probabilistic models to map inputs to latent spaces and perform probabilistic translation across modalities. This design captures cell-type heterogeneity, accounts for data sparsity, and models uncertainty during translation. Extensive experiments on eight benchmark datasets demonstrate that scDCT outperforms state-of-the-art methods across paired, unpaired, cross-type, and cross-tissue settings, offering a robust and interpretable solution for single-cell multi-omics integration.
Junlei Zhou, Jialiang Xue, Furui Liu, Fang Du, Zhenhua Yu 0002
Briefings Bioinform.4
2025 Illuminating the unseen: Advancing MRI domain generalization through causality
Tianjiao Zeng, Furui Liu, Qi Dou 0001, Hing-Chiu Chang, Edward S. Hui
Medical Image Anal.3
2025 scSTD: A Swin Transformer-Based Diffusion Model for Recovering scRNA-Seq Data
abstract
Dropout events and technical noise are pervasive challenges in single-cell RNA sequencing (scRNA-seq) data, often obscuring true gene expression profiles and undermining the reliability of downstream analyses. Existing imputation and denoising methods offer partial relief but frequently struggle with over-smoothing and fail to fully capture the complex heterogeneity of cellular states. To address these limitations, we introduce scSTD, a novel imputation and denoising framework that uniquely combines the Swin Transformer (SwinT) architecture with a latent diffusion model. In scSTD, a deep autoencoder first encodes each cell into a compact latent embedding, which is then modeled via a SwinT-based latent diffusion process designed to learn the rich, multimodal distribution of scRNA-seq data. This integration enables scSTD to accurately recover gene expression profiles while preserving subtle biological variation. By synthesizing realistic latent neighbors for each cell and aggregating their decoded outputs, scSTD achieves high-fidelity imputation and denoising. Comprehensive evaluations on both synthetic and real scRNA-seq datasets demonstrate that scSTD significantly outperforms existing methods in recovering true gene expression profiles and maintaining the topological integrity of cellular landscapes.
Furui Liu, Junlei Zhou, Fangyuan Shi, Zhenhua Yu 0002
IEEE J. Biomed. Health Informatics2
2024 Where and How to Attack? A Causality-Inspired Recipe for Generating Counterfactual Adversarial Examples
abstract
Deep neural networks (DNNs) have been demonstrated to be vulnerable to well-crafted adversarial examples, which are generated through either well-conceived L_p-norm restricted or unrestricted attacks. Nevertheless, the majority of those approaches assume that adversaries can modify any features as they wish, and neglect the causal generating process of the data, which is unreasonable and unpractical. For instance, a modification in income would inevitably impact features like the debt-to-income ratio within a banking system. By considering the underappreciated causal generating process, first, we pinpoint the source of the vulnerability of DNNs via the lens of causality, then give theoretical results to answer where to attack. Second, considering the consequences of the attack interventions on the current state of the examples to generate more realistic adversarial examples, we propose CADE, a framework that can generate Counterfactual ADversarial Examples to answer how to attack. The empirical results demonstrate CADE's effectiveness, as evidenced by its competitive performance across diverse attack scenarios, including white-box, transfer-based, and random intervention attacks.
Ruichu Cai, Yuxuan Zhu 0001, Jie Qiao, Zefeng Liang, Furui Liu, Zhifeng Hao 0004
AAAI5
2024 DR-Label: Label Deconstruction and Reconstruction of GNN Models for Catalysis Systems
abstract
Attaining the equilibrium geometry of a catalyst-adsorbate system is key to fundamentally assessing its effective properties, such as adsorption energy. While machine learning methods with advanced representation or supervision strategies have been applied to boost and guide the relaxation processes of catalysis systems, existing methods that produce linearly aggregated geometry predictions are susceptible to edge representations ambiguity, and are therefore vulnerable to graph variations. In this paper, we present a novel graph neural network (GNN) supervision and prediction strategy DR-Label. Our approach mitigates the multiplicity of solutions in edge representation and encourages model predictions that are independent of graph structural variations. DR-Label first Deconstructs finer-grained equilibrium state information to the model by projecting the node-level supervision signal to each edge. Reversely, the model Reconstructs a more robust equilibrium state prediction by converting edge-level predictions to node-level via a sphere-fitting algorithm. When applied to three fundamentally different models, DR-Label consistently enhanced performance. Leveraging the graph structure invariance of the DR-Label strategy, we further propose DRFormer, which applied explicit intermediate positional update and achieves a new state-of-the-art performance on the Open Catalyst 2020 (OC20) dataset and the Cu-based single-atom alloys CO adsorption (SAA) dataset. We expect our work to highlight vital principles for advancing geometric GNN models for catalysis systems and beyond. Our code is available at https://github.com/bowenwang77/DR-Label
Bowen Wang 0017, Jiezhong Qiu, Furui Liu, Shaogang Hao, Dong Li 0016, Guangyong Chen, Xiaolong Zou, Pheng-Ann Heng
AAAI5
2024 ANEDL: Adaptive Negative Evidential Deep Learning for Open-Set Semi-supervised Learning
abstract
Semi-supervised learning (SSL) methods assume that labeled data, unlabeled data and test data are from the same distribution. Open-set semi-supervised learning (Open-set SSL) con- siders a more practical scenario, where unlabeled data and test data contain new categories (outliers) not observed in labeled data (inliers). Most previous works focused on out- lier detection via binary classifiers, which suffer from insufficient scalability and inability to distinguish different types of uncertainty. In this paper, we propose a novel framework, Adaptive Negative Evidential Deep Learning (ANEDL) to tackle these limitations. Concretely, we first introduce evidential deep learning (EDL) as an outlier detector to quantify different types of uncertainty, and design different uncertainty metrics for self-training and inference. Furthermore, we propose a novel adaptive negative optimization strategy, making EDL more tailored to the unlabeled dataset containing both inliers and outliers. As demonstrated empirically, our proposed method outperforms existing state-of-the-art methods across four datasets.
Yang Yu 0070, Danruo Deng, Furui Liu, Qi Dou 0001, Yueming Jin, Guangyong Chen, Pheng-Ann Heng
AAAI3
2024 Rethinking Exploration in Reinforcement Learning with Effective Metric-Based Exploration Bonus
abstract
Enhancing exploration in reinforcement learning (RL) through the incorporation of intrinsic rewards, specifically by leveraging *state discrepancy* measures within various metric spaces as exploration bonuses, has emerged as a prevalent strategy to encourage agents to visit novel states. The critical factor lies in how to quantify the difference between adjacent states as *novelty* for promoting effective exploration. Nonetheless, existing methods that evaluate state discrepancy in the latent space under $L_1$ or $L_2$ norm often depend on count-based episodic terms as scaling factors for exploration bonuses, significantly limiting their scalability. Additionally, methods that utilize the bisimulation metric for evaluating state discrepancies face a theory-practice gap due to improper approximations in metric learning, particularly struggling with *hard exploration* tasks. To overcome these challenges, we introduce the **E**ffective **M**etric-based **E**xploration-bonus (EME). EME critically examines and addresses the inherent limitations and approximation inaccuracies of current metric-based state discrepancy methods for exploration, proposing a robust metric for state discrepancy evaluation backed by comprehensive theoretical analysis. Furthermore, we propose the diversity-enhanced scaling factor integrated into the exploration bonus to be dynamically adjusted by the variance of prediction from an ensemble of reward models, thereby enhancing exploration effectiveness in particularly challenging scenarios. Extensive experiments are conducted on hard exploration tasks within Atari games, Minigrid, Robosuite, and Habitat, which illustrate our method's scalability to various scenarios. The project website can be found at https://sites.google.com/view/effective-metric-exploration.
Kaiyan Zhao, Furui Liu, Leong Hou U
NeurIPS3
2024 Team-wise effective communication in multi-agent reinforcement learning
Kaiyan Zhao, Renzhi Dong, Yali Du 0001, Furui Liu, Mingliang Zhou 0001, Leong Hou U
Auton. Agents Multi Agent Syst.6
2024 CoT: a transformer-based method for inferring tumor clonal copy number substructure from scDNA-seq data
abstract
Single-cell DNA sequencing (scDNA-seq) has been an effective means to unscramble intra-tumor heterogeneity, while joint inference of tumor clones and their respective copy number profiles remains a challenging task due to the noisy nature of scDNA-seq data. We introduce a new bioinformatics method called CoT for deciphering clonal copy number substructure. The backbone of CoT is a Copy number Transformer autoencoder that leverages multi-head attention mechanism to explore correlations between different genomic regions, and thus capture global features to create latent embeddings for the cells. CoT makes it convenient to first infer cell subpopulations based on the learned embeddings, and then estimate single-cell copy numbers through joint analysis of read counts data for the cells belonging to the same cluster. This exploitation of clonal substructure information in copy number analysis helps to alleviate the effect of read counts non-uniformity, and yield robust estimations of the tumor copy numbers. Performance evaluation on synthetic and real datasets showcases that CoT outperforms the state of the arts, and is highly useful for deciphering clonal copy number substructure.
Furui Liu, Fangyuan Shi, Fang Du, Xiangmei Cao, Zhenhua Yu 0002
Briefings Bioinform.1
2024 scTCA: a hybrid Transformer-CNN architecture for imputation and denoising of scDNA-seq data
abstract
Single-cell DNA sequencing (scDNA-seq) has been widely used to unmask tumor copy number alterations (CNAs) at single-cell resolution. Despite that arm-level CNAs can be accurately detected from single-cell read counts, it is difficult to precisely identify focal CNAs as the read counts are featured with high dimensionality, high sparsity and low signal-to-noise ratio. This gives rise to a desperate demand for reconstructing high-quality scDNA-seq data. We develop a new method called scTCA for imputation and denoising of single-cell read counts, thus aiding in downstream analysis of both arm-level and focal CNAs. scTCA employs hybrid Transformer-CNN architectures to identify local and non-local correlations between genes for precise recovery of the read counts. Unlike conventional Transformers, the Transformer block in scTCA is a two-stage attention module containing a stepwise self-attention layer and a window Transformer, and can efficiently deal with the high-dimensional read counts data. We showcase the superior performance of scTCA through comparison with the state-of-the-arts on both synthetic and real datasets. The results indicate it is highly effective in imputation and denoising of scDNA-seq data.
Zhenhua Yu 0002, Furui Liu
Briefings Bioinform.2
2023 Learning from Good Trajectories in Offline Multi-Agent Reinforcement Learning
abstract
Offline multi-agent reinforcement learning (MARL) aims to learn effective multi-agent policies from pre-collected datasets, which is an important step toward the deployment of multi-agent systems in real-world applications. However, in practice, each individual behavior policy that generates multi-agent joint trajectories usually has a different level of how well it performs. e.g., an agent is a random policy while other agents are medium policies. In the cooperative game with global reward, one agent learned by existing offline MARL often inherits this random policy, jeopardizing the utility of the entire team. In this paper, we investigate offline MARL with explicit consideration on the diversity of agent-wise trajectories and propose a novel framework called Shared Individual Trajectories (SIT) to address this problem. Specifically, an attention-based reward decomposition network assigns the credit to each agent through a differentiable key-value memory mechanism in an offline manner. These decomposed credits are then used to reconstruct the joint offline datasets into prioritized experience replay with individual trajectories, thereafter agents can share their good trajectories and conservatively train their policies with a graph attention network (GAT) based critic. We evaluate our method in both discrete control (i.e., StarCraft II and multi-agent particle environment) and continuous control (i.e., multi-agent mujoco). The results indicate that our method achieves significantly better results in complex and mixed offline multi-agent datasets, especially when the difference of data quality between individual trajectories is large.
Qi Tian 0003, Kun Kuang 0001, Furui Liu, Baoxiang Wang 0001
AAAI3
2023 Learning Instrumental Variable from Data Fusion for Treatment Effect Estimation
abstract
The advent of the big data era brought new opportunities and challenges to draw treatment effect in data fusion, that is, a mixed dataset collected from multiple sources (each source with an independent treatment assignment mechanism). Due to possibly omitted source labels and unmeasured confounders, traditional methods cannot estimate individual treatment assignment probability and infer treatment effect effectively. Therefore, we propose to reconstruct the source label and model it as a Group Instrumental Variable (GIV) to implement IV-based Regression for treatment effect estimation. In this paper, we conceptualize this line of thought and develop a unified framework (Meta-EM) to (1) map the raw data into a representation space to construct Linear Mixed Models for the assigned treatment variable; (2) estimate the distribution differences and model the GIV for the different treatment assignment mechanisms; and (3) adopt an alternating training strategy to iteratively optimize the representations and the joint distribution to model GIV for IV regression. Empirical results demonstrate the advantages of our Meta-EM compared with state-of-the-art methods. The project page with the code and the Supplementary materials is available at https://github.com/causal-machine-learning-lab/meta-em.
Anpeng Wu, Kun Kuang 0001, Ruoxuan Xiong, Minqing Zhu, Bo Li 0064, Furui Liu, Zhihua Wang 0008, Fei Wu 0001
AAAI7
2023 RepMode: Learning to Re-Parameterize Diverse Experts for Subcellular Structure Prediction
abstract
In biological research, fluorescence staining is a key technique to reveal the locations and morphology of subcellular structures. However, it is slow, expensive, and harmful to cells. In this paper, we model it as a deep learning task termed subcellular structure prediction (SSP), aiming to predict the 3D fluorescent images of multiple subcellular structures from a 3D transmitted-light image. Unfortunately, due to the limitations of current biotechnology, each image is partially labeled in SSP. Besides, naturally, subcellular structures vary considerably in size, which causes the multi-scale issue of SSP. To overcome these challenges, we propose Re-parameterizing Mixture-of-Diverse-Experts (RepMode), a network that dynamically organizes its parameters with task-aware priors to handle specified single-label prediction tasks. In RepMode, the Mixture-of-Diverse-Experts (MoDE) block is designed to learn the generalized parameters for all tasks, and gating re-parameterization (GatRep) is performed to generate the specialized parameters for each task, by which RepMode can maintain a compact practical topology exactly like a plain network, and meanwhile achieves a powerful theoretical topology. Comprehensive experiments show that RepMode can achieve state-of-the-art overall performance in SSP.
Chunbin Gu, Junde Xu, Furui Liu, Qiong Wang 0001, Guangyong Chen, Pheng-Ann Heng
CVPR4
2023 TieComm: Learning a Hierarchical Communication Topology Based on Tie Theory
Renzhi Dong, Furui Liu, Yali Du 0001, Mingliang Zhou 0001, Leong Hou U
DASFAA (1)4
2023 Traj-MAE: Masked Autoencoders for Trajectory Prediction
abstract
Trajectory prediction has been a crucial task in building a reliable autonomous driving system by anticipating possible dangers. One key issue is to generate consistent trajectory predictions without colliding. To overcome the challenge, we propose an efficient masked autoencoder for trajectory prediction (Traj-MAE) that better represents the complicated behaviors of agents in the driving environment. Specifically, our Traj-MAE employs diverse masking strategies to pre-train the trajectory encoder and map encoder, allowing for the capture of social and temporal information among agents while leveraging the effect of environment from multiple granularities. To address the catastrophic forgetting problem that arises when pre-training the network with multiple masking strategies, we introduce a continual pre-training framework, which can help Traj-MAE learn valuable and diverse information from various strategies efficiently. Our experimental results in both multi-agent and single-agent settings demonstrate that Traj-MAE achieves competitive results with state-of-the-art methods and significantly outperforms our baseline model. Project page: https://jiazewang.com/projects/trajmae.html.
Hao Chen 0193, Kun Shao, Furui Liu, Jianye Hao, Chenyong Guan, Guangyong Chen, Pheng-Ann Heng
ICCV4
2023 CauSSL: Causality-inspired Semi-supervised Learning for Medical Image Segmentation
abstract
Semi-supervised learning (SSL) has recently demonstrated great success in medical image segmentation, significantly enhancing data efficiency with limited annotations. However, despite its empirical benefits, there are still concerns in the literature about the theoretical foundation and explanation of semi-supervised segmentation. To explore this problem, this study first proposes a novel causal diagram to provide a theoretical foundation for the mainstream semi-supervised segmentation methods. Our causal diagram takes two additional intermediate variables into account, which are neglected in previous work. Drawing from this proposed causal diagram, we then introduce a causality-inspired SSL approach on top of co-training frameworks called CauSSL, to improve SSL for medical image segmentation. Specifically, we first point out the importance of algorithmic independence between two networks or branches in SSL, which is often overlooked in the literature. We then propose a novel statistical quantification of the uncomputable algorithmic independence and further enhance the independence via a min-max optimization process. Our method can be flexibly incorporated into different existing SSL methods to improve their performance. Our method has been evaluated on three challenging medical image segmentation tasks using both 2D and 3D network architectures and has shown consistent improvements over state-of-the-art methods. Our code is publicly available at: https://github.com/JuzhengMiao/CauSSL.
Juzheng Miao, Cheng Chen 0013, Furui Liu, Pheng-Ann Heng
ICCV3
2023 Uncertainty Estimation by Fisher Information-based Evidential Deep Learning
abstract
Uncertainty estimation is a key factor that makes deep learning reliable in practical applications. Recently proposed evidential neural networks explicitly account for different uncertainties by treating the network's outputs as evidence to parameterize the Dirichlet distribution, and achieve impressive performance in uncertainty estimation. However, for high data uncertainty samples but annotated with the one-hot label, the evidence-learning process for those mislabeled classes is over-penalized and remains hindered. To address this problem, we propose a novel method, Fisher Information-based Evidential Deep Learning ($\mathcal{I}$-EDL). In particular, we introduce Fisher Information Matrix (FIM) to measure the informativeness of evidence carried by each sample, according to which we can dynamically reweight the objective loss terms to make the network more focus on the representation learning of uncertain classes. The generalization ability of our network is further improved by optimizing the PAC-Bayesian bound. As demonstrated empirically, our proposed method consistently outperforms traditional EDL-related algorithms in multiple uncertainty estimation tasks, especially in the more challenging few-shot classification settings.
Danruo Deng, Guangyong Chen, Furui Liu, Pheng-Ann Heng
ICML4
2023 Specify Robust Causal Representation from Mixed Observations
abstract
Learning representations purely from observations concerns the problem of learning a low-dimensional, compact representation which is beneficial to prediction models. Under the hypothesis that the intrinsic latent factors follow some casual generative models, we argue that by learning a causal representation, which is the minimal sufficient causes of the whole system, we can improve the robustness and generalization performance of machine learning models. In this paper, we develop a learning method to learn such representation from observational data by regularizing the learning procedure with mutual information measures, according to the hypothetical factored causal graph. We theoretically and empirically show that the models trained with the learned causal representations are more robust under adversarial attacks and distribution shifts compared with baselines.
Mengyue Yang, Xinyu Cai, Furui Liu, Weinan Zhang 0001, Jun Wang 0012
KDD3
2023 Fast Non-Markovian Diffusion Model for Weakly Supervised Anomaly Detection in Brain MR Images
Jinpeng Li 0004, Hanqun Cao, Furui Liu, Qi Dou 0001, Guangyong Chen, Pheng-Ann Heng
MICCAI (5)4
2023 Learning Robust Classifier for Imbalanced Medical Image Dataset with Noisy Labels by Minimizing Invariant Risk
Jinpeng Li 0004, Hanqun Cao, Furui Liu, Qi Dou 0001, Guangyong Chen, Pheng-Ann Heng
MICCAI (6)4
2023 Efficient Potential-based Exploration in Reinforcement Learning using Inverse Dynamic Bisimulation Metric
abstract
Reward shaping is an effective technique for integrating domain knowledge into reinforcement learning (RL). However, traditional approaches like potential-based reward shaping totally rely on manually designing shaping reward functions, which significantly restricts exploration efficiency and introduces human cognitive biases. While a number of RL methods have been proposed to boost exploration by designing an intrinsic reward signal as exploration bonus. Nevertheless, these methods heavily rely on the count-based episodic term in their exploration bonus which falls short in scalability. To address these limitations, we propose a general end-to-end potential-based exploration bonus for deep RL via potentials of state discrepancy, which motivates the agent to discover novel states and provides them with denser rewards without manual intervention. Specifically, we measure the novelty of adjacent states by calculating their distance using the bisimulation metric-based potential function, which enhances agent's exploration and ensures policy invariance. In addition, we offer a theoretical guarantee on our inverse dynamic bisimulation metric, bounding the value difference and ensuring that the agent explores states with higher TD error, thus significantly improving training efficiency. The proposed approach is named \textbf{LIBERTY} (exp\textbf{L}oration v\textbf{I}a \textbf{B}isimulation m\textbf{E}t\textbf{R}ic-based s\textbf{T}ate discrepanc\textbf{Y}) which is comprehensively evaluated on the MuJoCo and the Arcade Learning Environments. Extensive experiments have verified the superiority and scalability of our algorithm compared with other competitive methods.
Renzhi Dong, Binbin Sun, Furui Liu, Leong Hou U
NeurIPS5
2023 Invariant Learning via Probability of Sufficient and Necessary Causes
abstract
Out-of-distribution (OOD) generalization is indispensable for learning models in the wild, where testing distribution typically unknown and different from the training. Recent methods derived from causality have shown great potential in achieving OOD generalization. However, existing methods mainly focus on the invariance property of causes, while largely overlooking the property of sufficiency and necessity conditions. Namely, a necessary but insufficient cause (feature) is invariant to distribution shift, yet it may not have required accuracy. By contrast, a sufficient yet unnecessary cause (feature) tends to fit specific data well but may have a risk of adapting to a new domain. To capture the information of sufficient and necessary causes, we employ a classical concept, the probability of sufficiency and necessary causes (PNS), which indicates the probability of whether one is the necessary and sufficient cause. To associate PNS with OOD generalization, we propose PNS risk and formulate an algorithm to learn representation with a high PNS value. We theoretically analyze and prove the generalizability of the PNS risk. Experiments on both synthetic and real-world benchmarks demonstrate the effectiveness of the proposed method. The detailed implementation can be found at the GitHub repository: https://github.com/ymy4323460/CaSN.
Mengyue Yang, Yonggang Zhang 0003, Zhen Fang 0001, Yali Du 0001, Furui Liu, Jean-Francois Ton, Jun Wang 0012
NeurIPS5
2023 rcCAE: a convolutional autoencoder method for detecting intra-tumor heterogeneity and single-cell copy number alterations
abstract
Intra-tumor heterogeneity (ITH) is one of the major confounding factors that result in cancer relapse, and deciphering ITH is essential for personalized therapy. Single-cell DNA sequencing (scDNA-seq) now enables profiling of single-cell copy number alterations (CNAs) and thus aids in high-resolution inference of ITH. Here, we introduce an integrated framework called rcCAE to accurately infer cell subpopulations and single-cell CNAs from scDNA-seq data. A convolutional autoencoder (CAE) is employed in rcCAE to learn latent representation of the cells as well as distill copy number information from noisy read counts data. This unsupervised representation learning via the CAE model makes it convenient to accurately cluster cells over the low-dimensional latent space, and detect single-cell CNAs from enhanced read counts data. Extensive performance evaluations on simulated datasets show that rcCAE outperforms the existing CNA calling methods, and is highly effective in inferring clonal architecture. Furthermore, evaluations of rcCAE on two real datasets demonstrate that it is able to provide a more refined clonal structure, of which some details are lost in clonal inference based on integer copy numbers.
Zhenhua Yu 0002, Furui Liu, Fangyuan Shi, Fang Du
Briefings Bioinform.2
2023 Contrastive-ACE: Domain Generalization Through Alignment of Causal Mechanisms
abstract
Domain generalization aims to learn knowledge invariant across different distributions while semantically meaningful for downstream tasks from multiple source domains, to improve the model's generalization ability on unseen target domains. The fundamental objective is to understand the underlying "invariance" behind these observational distributions and such invariance has been shown to have a close connection to causality. While many existing approaches make use of the property that causal features are invariant across domains, we consider the invariance of the average causal effect of the features to the labels. This invariance regularizes our training approach in which interventions are performed on features to enforce stability of the causal prediction by the classifier across domains. Our work thus sheds some light on the domain generalization problem by introducing invariance of the mechanisms into the learning process. Experiments on several benchmark datasets demonstrate the performance of the proposed method against SOTAs. The codes are available at: https://github.com/lithostark/Contrastive-ACE.
Furui Liu, Zhitang Chen, Yik-Chung Wu, Jianye Hao, Guangyong Chen, Pheng-Ann Heng
IEEE Trans. Image Process.2
2023 Debiased Recommendation with User Feature Balancing
abstract
Debiased recommendation has recently attracted increasing attention from both industry and academic communities. Traditional models mostly rely on the inverse propensity score (IPS), which can be hard to estimate and may suffer from the high variance issue. To alleviate these problems, in this article, we propose a novel debiased recommendation framework based on user feature balancing. The general idea is to introduce a projection function to adjust user feature distributions, such that the ideal unbiased learning objective can be upper bounded by a solvable objective purely based on the offline dataset. In the upper bound, the projected user distributions are expected to be equal given different items. From the causal inference perspective, this requirement aims to remove the causal relation from the user to the item, which enables us to achieve unbiased recommendation, bypassing the computation of IPS. To efficiently balance the user distributions upon each item pair, we propose three strategies, including clipping, sampling, and adversarial learning to improve the training process. For more robust optimization, we deploy an explicit model to capture the potential latent confounders in recommendation systems. To the best of our knowledge, this article is the first work on debiased recommendation based on confounder balancing. In the experiments, we compare our framework with many state-of-the-art methods based on synthetic, semi-synthetic, and real-world datasets. Extensive experiments demonstrate that our model is effective in promoting the recommendation performance.
Mengyue Yang, Guohao Cai, Furui Liu, Jiarui Jin, Zhenhua Dong, Xiuqiang He 0001, Jianye Hao, Weiqi Shao, Jun Wang 0012, Xu Chen 0017
ACM Trans. Inf. Syst.3
2022 Deconfounded Value Decomposition for Multi-Agent Reinforcement Learning
abstract
Value decomposition (VD) methods have been widely used in cooperative multi-agent reinforcement learning (MARL), where credit assignment plays an important role in guiding the agents’ decentralized execution. In this paper, we investigate VD from a novel perspective of causal inference. We first show that the environment in existing VD methods is an unobserved confounder as the common cause factor of the global state and the joint value function, which leads to the confounding bias on learning credit assignment. We then present our approach, deconfounded value decomposition (DVD), which cuts off the backdoor confounding path from the global state to the joint value function. The cut is implemented by introducing the trajectory graph, which depends only on the local trajectories, as a proxy confounder. DVD is general enough to be applied to various VD methods, and extensive experiments show that DVD can consistently achieve significant performance gains over different state-of-the-art VD methods on StarCraft II and MACO benchmarks.
Jiahui Li 0003, Kun Kuang 0001, Baoxiang Wang 0001, Furui Liu, Long Chen 0016, Changjie Fan, Fei Wu 0001, Jun Xiao 0001
ICML4
2022 S2RL: Do We Really Need to Perceive All States in Deep Multi-Agent Reinforcement Learning?
abstract
Collaborative multi-agent reinforcement learning (MARL) has been widely used in many practical applications, where each agent makes a decision based on its own observation. Most mainstream methods treat each local observation as an entirety when modeling the decentralized local utility functions. However, they ignore the fact that local observation information can be further divided into several entities, and only part of the entities is helpful to model inference. Moreover, the importance of different entities may change over time. To improve the performance of decentralized policies, the attention mechanism is used to capture features of local information. Nevertheless, existing attention models rely on dense fully connected graphs and cannot better perceive important states. To this end, we propose a sparse state based MARL (S2RL) framework, which utilizes a sparse attention mechanism to discard irrelevant information in local observations. The local utility functions are estimated through the self-attention and sparse attention mechanisms separately, then are combined into a standard joint value function and auxiliary joint value function in the central critic. We design the S2RL framework as a plug-and-play module, making it general enough to be applied to various methods. Extensive experiments on StarCraft II show that S2RL can significantly improve the performance of many state-of-the-art methods.
Yinchuan Li, Jiahui Li 0003, Kun Kuang 0001, Furui Liu, Yunfeng Shao 0001, Chao Wu 0001
KDD5
2022 ConfounderGAN: Protecting Image Data Privacy with Causal Confounder
abstract
The success of deep learning is partly attributed to the availability of massive data downloaded freely from the Internet. However, it also means that users' private data may be collected by commercial organizations without consent and used to train their models. Therefore, it's important and necessary to develop a method or tool to prevent unauthorized data exploitation. In this paper, we propose ConfounderGAN, a generative adversarial network (GAN) that can make personal image data unlearnable to protect the data privacy of its owners. Specifically, the noise produced by the generator for each image has the confounder property. It can build spurious correlations between images and labels, so that the model cannot learn the correct mapping from images to labels in this noise-added dataset. Meanwhile, the discriminator is used to ensure that the generated noise is small and imperceptible, thereby remaining the normal utility of the encrypted image for humans. The experiments are conducted in six image classification datasets, including three natural object datasets and three medical datasets. The results demonstrate that our method not only outperforms state-of-the-art methods in standard settings, but can also be applied to fast encryption scenarios. Moreover, we show a series of transferability and stability experiments to further illustrate the effectiveness and superiority of our method.
Qi Tian 0003, Kun Kuang 0001, Kelu Jiang, Furui Liu, Zhihua Wang 0008, Fei Wu 0001
NeurIPS4
2022 Branch Ranking for Efficient Mixed-Integer Programming via Offline Ranking-Based Policy Learning
Zeren Huang, Weinan Zhang 0001, Chuhan Shi, Furui Liu, Hui-Ling Zhen, Mingxuan Yuan, Jianye Hao, Yong Yu 0001, Jun Wang 0012
ECML/PKDD (5)5
2022 Weakly Supervised Disentangled Generative Causal Representation Learning
abstract
This paper proposes a Disentangled gEnerative cAusal Representation (DEAR) learning method under appropriate supervised information. Unlike existing disentanglement methods that enforce independence of the latent variables, we consider the general case where the underlying factors of interests can be causally related. We show that previous methods with independent priors fail to disentangle causally related factors even under supervision. Motivated by this finding, we propose a new disentangled learning method called DEAR that enables causal controllable generation and causal representation learning. The key ingredient of this new formulation is to use a structural causal model (SCM) as the prior distribution for a bidirectional generative model. The prior is then trained jointly with a generator and an encoder using a suitable GAN algorithm incorporated with supervised information on the ground-truth factors and their underlying causal structure. We provide theoretical justification on the identifiability and asymptotic convergence of the proposed method. We conduct extensive experiments on both synthesized and real data sets to demonstrate the effectiveness of DEAR in causal controllable generation, and the benefits of the learned representations for downstream tasks in terms of sample efficiency and distributional robustness.
Xinwei Shen 0002, Furui Liu, Hanze Dong, Qing Lian, Zhitang Chen, Tong Zhang 0001
J. Mach. Learn. Res.2
2022 Learning to select cuts for efficient mixed-integer programming
Zeren Huang, Kerong Wang, Furui Liu, Hui-Ling Zhen, Weinan Zhang 0001, Mingxuan Yuan, Jianye Hao, Yong Yu 0001, Jun Wang 0012
Pattern Recognit.3
2021 CausalVAE: Disentangled Representation Learning via Neural Structural Causal Models
abstract
Learning disentanglement aims at finding a low dimensional representation which consists of multiple explanatory and generative factors of the observational data. The framework of variational autoencoder (VAE) is commonly used to disentangle independent factors from observations. However, in real scenarios, factors with semantics are not necessarily independent. Instead, there might be an underlying causal structure which renders these factors dependent. We thus propose a new VAE based framework named CausalVAE, which includes a Causal Layer to transform independent exogenous factors into causal endogenous ones that correspond to causally related concepts in data. We further analyze the model identifiabitily, showing that the proposed model learned from observations recovers the true one up to a certain degree. Experiments are conducted on various datasets, including synthetic and real word benchmark CelebA. Results show that the causal representations learned by CausalVAE are semantically interpretable, and their causal relationship as a Directed Acyclic Graph (DAG) is identified with good accuracy. Furthermore, we demonstrate that the proposed CausalVAE model is able to generate counterfactual data through "do-operation" to the causal factors.
Mengyue Yang, Furui Liu, Zhitang Chen, Xinwei Shen 0002, Jianye Hao, Jun Wang 0012
CVPR2
2021 DARING: Differentiable Causal Discovery with Residual Independence
abstract
Discovering causal structure among a set of variables is a crucial task in various scientific and industrial scenarios. Given finite i.i.d. samples from a joint distribution, causal discovery is a challenging combinatorial problem in nature. The recent development in functional causal models, especially the NOTEARS provides a differentiable optimization framework for causal discovery. They formulate the structure learning problem as a task of maximum likelihood estimation over observational data (i.e., variable reconstruction) with specified structural constraints such as acyclicity and sparsity. Despite its success in terms of scalability, we find that optimizing the objectives of these differentiable methods is not always consistent with the correctness of learned causal graph especially when the variables carry heterogeneous noises (i.e., different noise types and noise variances) in real data from wild environments. In this paper, we provide the justification that their proneness to erroneous structures is mainly caused by the over-reconstruction problem, i.e., the noises of variables are absorbed into the variable reconstruction process, leading to the dependency among variable reconstruction residuals, and thus raise structure identifiability problems according to FCM theories. To remedy this, we propose a novel differentiable method DARING by imposing explicit residual independence constraint in an adversarial way. Extensive experimental results on both simulation and real data show that our proposed method is insensitive to the heterogeneity of external noise, and thus can significantly improve the causal discovery performances.
Yue He 0001, Peng Cui 0001, Zheyan Shen, Renzhe Xu, Furui Liu, Yong Jiang 0001
KDD5
2021 Shapley Counterfactual Credits for Multi-Agent Reinforcement Learning
abstract
Centralized Training with Decentralized Execution (CTDE) has been a popular paradigm in cooperative Multi-Agent Reinforcement Learning (MARL) settings and is widely used in many real applications. One of the major challenges in the training process is credit assignment, which aims to deduce the contributions of each agent according to the global rewards. Existing credit assignment methods focus on either decomposing the joint value function into individual value functions or measuring the impact of local observations and actions on the global value function. These approaches lack a thorough consideration of the complicated interactions among multiple agents, leading to an unsuitable assignment of credit and subsequently mediocre results on MARL. We propose Shapley Counterfactual Credit Assignment, a novel method for explicit credit assignment which accounts for the coalition of agents. Specifically, Shapley Value and its desired properties are leveraged in deep MARL to credit any combinations of agents, which grants us the capability to estimate the individual credit for each agent. Despite this capability, the main technical difficulty lies in the computational complexity of Shapley Value who grows factorially as the number of agents. We instead utilize an approximation method via Monte Carlo sampling, which reduces the sample complexity while maintaining its effectiveness. We evaluate our method on StarCraft II benchmarks across different scenarios. Our method outperforms existing cooperative MARL algorithms significantly and achieves the state-of-the-art, with especially large margins on tasks with more severe difficulties.
Jiahui Li 0003, Kun Kuang 0001, Baoxiang Wang 0001, Furui Liu, Long Chen 0016, Fei Wu 0001, Jun Xiao 0001
KDD4
2018 Confounder Detection in High-Dimensional Linear Models Using First Moments of Spectral Measures
abstract
In this letter, we study the confounder detection problem in the linear model, where the target variable [Formula: see text] is predicted using its [Formula: see text] potential causes [Formula: see text]. Based on an assumption of a rotation-invariant generating process of the model, recent study shows that the spectral measure induced by the regression coefficient vector with respect to the covariance matrix of [Formula: see text] is close to a uniform measure in purely causal cases, but it differs from a uniform measure characteristically in the presence of a scalar confounder. Analyzing spectral measure patterns could help to detect confounding. In this letter, we propose to use the first moment of the spectral measure for confounder detection. We calculate the first moment of the regression vector-induced spectral measure and compare it with the first moment of a uniform spectral measure, both defined with respect to the covariance matrix of [Formula: see text]. The two moments coincide in nonconfounding cases and differ from each other in the presence of confounding. This statistical causal-confounding asymmetry can be used for confounder detection. Without the need to analyze the spectral measure pattern, our method avoids the difficulty of metric choice and multiple parameter optimization. Experiments on synthetic and real data show the performance of this method.
Furui Liu, Lai-Wan Chan
Neural Comput.1
2018 Causal Inference on Multidimensional Data Using Free Probability Theory
abstract
In this paper, we deal with the problem of inferring causal relations for multidimensional data. Based on the postulate that the distribution of the cause and the conditional distribution of the effect given cause are generated independently, we show that the covariance matrix of the mean embedding of the cause in reproducing kernel Hilbert space (RKHS) is free independent with the covariance matrix of the conditional embedding of the effect given cause. This, called freeness condition, induces a cause-effect asymmetry that a designed measurement is 0 in the causal direction but smaller than 0 in the anticausal direction, and it uncovers the causal direction. One important novel aspect of this paper is that we interpret the independence as a freeness condition between covariance matrices of RKHS distribution embeddings, and it has a wide applicability. We show that our freeness condition-based inference method succeeds in scenarios like additive noise cases, where other methods fail, by theoretical analysis and experimental results.
Furui Liu, Lai-Wan Chan
IEEE Trans. Neural Networks Learn. Syst.1
2017 On the Relations of Theoretical Foundations of Different Causal Inference Algorithms
Furui Liu, Lai-Wan Chan
IDEAL1
2016 Causal Inference on Discrete Data via Estimating Distance Correlations
abstract
In this article, we deal with the problem of inferring causal directions when the data are on discrete domain. By considering the distribution of the cause [Formula: see text] and the conditional distribution mapping cause to effect [Formula: see text] as independent random variables, we propose to infer the causal direction by comparing the distance correlation between [Formula: see text] and [Formula: see text] with the distance correlation between [Formula: see text] and [Formula: see text]. We infer that X causes Y if the dependence coefficient between [Formula: see text] and [Formula: see text] is smaller. Experiments are performed to show the performance of the proposed method.
Furui Liu, Lai-Wan Chan
Neural Comput.1
2016 Causal Discovery on Discrete Data with Extensions to Mixture Model
abstract
In this article, we deal with the causal discovery problem on discrete data. First, we present a causal discovery method for traditional additive noise models that identifies the causal direction by analyzing the supports of the conditional distributions. Then, we present a causal mixture model to address the problem that the function transforming cause to effect varies across the observations. We propose a novel method called Support Analysis (SA) for causal discovery with the mixture model. Experiments using synthetic and real data are presented to demonstrate the performance of our proposed algorithm.
Furui Liu, Lai-Wan Chan
ACM Trans. Intell. Syst. Technol.1
2013 U-Air: when urban air quality inference meets big data
abstract
Information about urban air quality, e.g., the concentration of PM2.5, is of great importance to protect human health and control air pollution. While there are limited air-quality-monitor-stations in a city, air quality varies in urban spaces non-linearly and depends on multiple factors, such as meteorology, traffic volume, and land uses. In this paper, we infer the real-time and fine-grained air quality information throughout a city, based on the (historical and real-time) air quality data reported by existing monitor stations and a variety of data sources we observed in the city, such as meteorology, traffic flow, human mobility, structure of road networks, and point of interests (POIs). We propose a semi-supervised learning approach based on a co-training framework that consists of two separated classifiers. One is a spatial classifier based on an artificial neural network (ANN), which takes spatially-related features (e.g., the density of POIs and length of highways) as input to model the spatial correlation between air qualities of different locations. The other is a temporal classifier based on a linear-chain conditional random field (CRF), involving temporally-related features (e.g., traffic and meteorology) to model the temporal dependency of air quality in a location. We evaluated our approach with extensive experiments based on five real data sources obtained in Beijing and Shanghai. The results show the advantages of our method over four categories of baselines, including linear/Gaussian interpolations, classical dispersion models, well-known classification models like decision tree and CRF, and ANN.
Yu Zheng 0004, Furui Liu, Hsun-Ping Hsieh
KDD2
2012 Unsupervised Feature Selection for Multi-cluster Data via Smooth Distributed Score
Furui Liu, Xiyan Liu
ICIC (3)1