Abstract. Directed Token Sliding asks, given a directed graph and two sets of pairwise nonadjacent vertices, whether one can reach from one set to the other by repeatedly applying a local operation that exchanges a vertex in the current set with one of its out-neighbors, while keeping the nonadjacency. It can be seen as a reconfiguration process where a token is placed on each vertex in the current set, and the local operation slides a token along an arc respecting its direction. Previously, such a problem was extensively studied on undirected graphs, where the edges have no directions and thus the local operation is symmetric. Directed Token Sliding is a generalization of its undirected variant since an undirected edge can be simulated by two arcs of opposite directions. In this paper, we initiate the algorithmic study of Directed Token Sliding. We first observe that the problem is PSPACE-complete even if we forbid parallel arcs in opposite directions and that the problem on directed acyclic graphs is NP-complete and W[1]-hard parameterized by the size of the sets in consideration. We then show our main result: a linear-time algorithm for the problem on directed graphs whose underlying undirected graphs are trees, which are called polytrees. Such a result is also known for the undirected variant of the problem on trees [Demaine et al., Theoret. Comput. Sci., 600 (2015), pp. 132–142], but the techniques used here are quite different because of the asymmetric nature of the directed problem. We present a characterization of yes-instances based on the existence of a certain set of directed paths, and then derive simple equivalent conditions from it by some observations, which yield an efficient algorithm. For the polytree case, we also present a quadratic-time algorithm that outputs, if the input is a yes-instance, one of the shortest reconfiguration sequences.

Abstract Graphlets of order k in a graph G are connected subgraphs induced by k nodes (called k-graphlets) or by k edges (called edge k-graphlets). They are among the interesting subgraphs in network analysis to get insights on both the local and global structure of a network. While several algorithms exist for discovering and enumerating graphlets, the amortized time complexity of such algorithms typically depends on the size of the graph G, or its maximum degree. In real networks, even the latter can be in the order of millions, whereas k is typically required to be a small value. In this paper we provide the first algorithm to list all graphlets of order k in a graph $$G=(V,E)$$ G = ( V , E ) with an amortized time complexity depending solely on the order k, contrarily to previous approaches where the cost depends also on the size of G or its maximum degree. Specifically, we show that it is possible to list k-graphlets in $$O(k^2)$$ O ( k 2 ) time per solution, and to list edge k-graphlets in O(k) time per solution. Furthermore we show that, if the input graph has bounded degree, then the amortized time for listing k-graphlets is reduced to O(k). Whenever $$k = O(1)$$ k = O ( 1 ) , as it is often the case in practical settings, these algorithms are the first to achieve constant time per solution.

A property Π on a finite set U is monotone if for every X ⊆ U satisfying Π , every superset Y ⊆ U of X also satisfies Π . Many combinatorial properties can be seen as monotone properties. The problem of finding a subset of U satisfying Π with the minimum weight is a central problem in combinatorial optimization. Although many approximate/exact algorithms have been developed to solve this kind of problem on numerous properties, a solution obtained by these algorithms is often unsuitable for real-world applications due to the difficulty of building accurate mathematical models on real-world problems. A promising approach to overcome this difficulty is to enumerate multiple small solutions rather than to find a single small solution. To this end, given a weight function w : U → Q > 0 and k ∈ Q > 0 , we devise algorithms that approximately enumerate all minimal subsets of U with weight at most k satisfying Π for various monotone properties Π , where “approximate enumeration” means that algorithms output all minimal subsets satisfying Π whose weight is at most k and may output some minimal subsets satisfying Π whose weight exceeds k but is at most c k for some constant c ≥ 1 . These algorithms allow us to efficiently enumerate minimal vertex covers, minimal dominating sets in bounded degree graphs, minimal feedback vertex sets, minimal hitting sets in bounded rank hypergraphs, etc., of weight at most k with constant approximation factors.

A ladder lottery , known as “Amidakuji” in Japan, is a common way to decide an assignment at random. In this paper, we investigate reconfiguration and enumeration problems of cyclic ladder lotteries. First, when a permutation π and an optimal displacement vector x are given, we investigate the reconfiguration and enumeration problems of the “optimal” cyclic ladder lotteries of π and x . Next, for a given permutation π we consider reconfiguration and enumeration problems of the optimal displacement vectors of π .

Finding a maximum cardinality common independent set in two matroids (also known as \textsc{Matroid Intersection}) is a classical combinatorial optimization problem, which generalizes several well-known problems, such as finding a maximum bipartite matching, a maximum colorful forest, and an arborescence in directed graphs. Enumerating all maximal common independent sets in two (or more) matroids is a classical enumeration problem. In this paper, we address an ``intersection'' of these problems: Given two matroids and a threshold $τ$, the goal is to enumerate all maximal common independent sets in the matroids with cardinality at least $τ$. We show that this problem can be solved in polynomial delay and polynomial space. Moreover, our technique can be extended to a more general problem, which is relevant to Matroid Matching. We give a polynomial-delay and polynomial-space algorithm for enumerating all maximal ``matchings'' with cardinality at least $τ$, assuming that the optimization counterpart is ``tractable'' in a certain sense. This extension allows us to enumerate small minimal connected vertex covers in subcubic graphs. We also discuss a framework to convert enumeration with cardinality constraints into ranked enumeration.

Directed Token Sliding asks, given a directed graph and two sets of pairwise nonadjacent vertices, whether one can reach from one set to the other by repeatedly applying a local operation that exchanges a vertex in the current set with one of its out-neighbors, while keeping the nonadjacency. It can be seen as a reconfiguration process where a token is placed on each vertex in the current set, and the local operation slides a token along an arc respecting its direction. Previously, such a problem was extensively studied on undirected graphs, where the edges have no directions and thus the local operation is symmetric. Directed Token Sliding is a generalization of its undirected variant since an undirected edge can be simulated by two arcs of opposite directions. In this paper, we initiate the algorithmic study of Directed Token Sliding. We first observe that the problem is PSPACE-complete even if we forbid parallel arcs in opposite directions and that the problem on directed acyclic graphs is NP-complete and W[1]-hard parameterized by the size of the sets in consideration. We then show our main result: a linear-time algorithm for the problem on directed graphs whose underlying undirected graphs are trees, which are called polytrees. Such a result is also known for the undirected variant of the problem on trees [Demaine et al. TCS 2015], but the techniques used here are quite different because of the asymmetric nature of the directed problem. We present a characterization of yes-instances based on the existence of a certain set of directed paths, and then derive simple equivalent conditions from it by some observations, which yield an efficient algorithm. For the polytree case, we also present a quadratic-time algorithm that outputs, if the input is a yes-instance, one of the shortest reconfiguration sequences.

Kimelfeld and Sagiv [Kimelfeld and Sagiv, PODS 2006], [Kimelfeld and Sagiv, Inf. Syst. 2008] pointed out that the problem of enumerating K-fragments is of great importance in a keyword search on data graphs. In a graph-theoretic term, the problem corresponds to enumerating minimal Steiner trees in (directed) graphs. In this paper, we propose a linear-delay and polynomial-space algorithm for enumerating all minimal Steiner trees, improving on a previous result in [Kimelfeld and Sagiv, Inf. Syst. 2008]. Our enumeration algorithm can be extended to other Steiner problems, such as minimal Steiner forests, minimal terminal Steiner trees, and minimal directed Steiner trees. As another variant of the minimal Steiner tree enumeration problem, we study the problem of enumerating minimal induced Steiner subgraphs. We propose a polynomial-delay and exponential-space enumeration algorithm of minimal induced Steiner subgraphs on claw-free graphs. Contrary to these tractable results, we show that the problem of enumerating minimal group Steiner trees is at least as hard as the minimal transversal enumeration problem on hypergraphs.

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields that such a transformation always exists if we have no constraints on spanning trees. In this paper, we wish to find a transformation which passes through only spanning trees satisfying some constraint. Our focus is bounding either the maximum degree or the diameter of spanning trees, and we give the following results. The problem with a lower bound on maximum degree is solvable in polynomial time, while the problem with an upper bound on maximum degree is PSPACE-complete. The problem with a lower bound on diameter is NP-hard, while the problem with an upper bound on diameter is solvable in polynomial time.

In this paper, we consider enumeration problems for edge-distinct and vertex-distinct Eulerian trails. Two Eulerian trails are said to be edge-distinct if the edge sequences are not identical, and they are said to be vertex-distinct if the vertex sequences are not identical. To solve these problems, we propose optimal enumeration algorithms that run in O(N+m) total time, where N is the number of solutions and m is the number of edges in an input connected graph. The proposed algorithms are based on the reverse search technique introduced by [Avis and Fukuda, DAM 1996], and the push-out amortization technique introduced by [Uno, WADS 2015].

A k-anticover of a string x is a set of pairwise distinct factors of x of equal length k, such that every symbol of x is contained into an occurrence of at least one of those factors. The existence of a k-anticover can be seen as a notion of non-redundancy, which has application in computational biology, where they are associated with various non-regulatory mechanisms. In this paper we address the complexity of the problem of finding a k-anticover of a string x if it exists, showing that the decision problem is NP-complete on general strings for k ≥ 3. We also show that the problem admits a polynomial-time solution for k=2. For unbounded k, we provide an exact exponential algorithm to find a k-anticover of a string of length n (or determine that none exists), which runs in O*(min {3^{(n-k)/3)}, ((k(k+1))/2)^{n/(k+1)) time using polynomial space.

Let $G$ be a graph and $T_1,T_2$ be two spanning trees of $G$. We say that $T_1$ can be transformed into $T_2$ via an edge flip if there exist two edges $e \in T_1$ and $f$ in $T_2$ such that $T_2= (T_1 \setminus e) \cup f$. Since spanning trees form a matroid, one can indeed transform a spanning tree into any other via a sequence of edge flips, as observed by Ito et al. We investigate the problem of determining, given two spanning trees $T_1,T_2$ with an additional property $Π$, if there exists an edge flip transformation from $T_1$ to $T_2$ keeping property $Π$ all along. First we show that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at most $k$ (for any fixed $k \ge 3$) leaves is PSPACE-complete. We then prove that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at least $k$ leaves (where $k$ is part of the input) is PSPACE-complete even restricted to split, bipartite or planar graphs. We complete this result by showing that the problem becomes polynomial for cographs, interval graphs and when $k=n-2$.

A k-coloring of a graph maps each vertex of the graph to a color in {1, 2, …, k}, such that no two adjacent vertices receive the same color. Given a k-coloring of a graph, a Kempe change produces a new k-coloring by swapping the colors in a bicolored connected component. We investigate the complexity of finding the smallest number of Kempe changes needed to transform a given k-coloring into another given k-coloring. We show that this problem admits a polynomial-time dynamic programming algorithm on path graphs, which turns out to be highly non-trivial. Furthermore, the problem is NP-hard even on star graphs and we show that on such graphs it admits a constant-factor approximation algorithm and is fixed-parameter tractable when parameterized by the number k of colors. The hardness result as well as the algorithmic results are based on the notion of a canonical transformation.

We study the perfect matching reconfiguration problem: Given two perfect matchings of a graph, is there a sequence of flip operations that transforms one into the other? Here, a flip operation exchanges the edges in an alternating cycle of length four. We are interested in the complexity of this decision problem from the viewpoint of graph classes. We first prove that the problem is PSPACE-complete even for split graphs and for bipartite graphs of bounded bandwidth with maximum degree five. We then investigate polynomial-time solvable cases. Specifically, we prove that the problem is solvable in polynomial time for strongly orderable graphs (that include interval graphs and strongly chordal graphs), for outerplanar graphs, and for cographs (also known as P_4-free graphs). Furthermore, for each yes-instance from these graph classes, we show that a linear number of flip operations is sufficient and we can exhibit a corresponding sequence of flip operations in polynomial time.

This paper investigates induced Steiner subgraphs as a variant of the classical Steiner trees, so as to compactly represent the (exponentially many) Steiner trees sharing the same underlying induced subgraph. We prove that the enumeration of all (inclusion-minimal) induced Steiner subgraphs is harder than the well-known Hypergraph Transversal enumeration problem if the number of terminals is not fixed. When the number of terminals is fixed, we propose a polynomial delay algorithm for listing all induced Steiner subgraphs of minimum size. We also propose a polynomial delay algorithm for listing the set of minimal induced Steiner subgraphs when the number of terminals is 3.

A dominating set $D$ of a graph $G$ is a set of vertices such that any vertex in $G$ is in $D$ or its neighbor is in $D$. Enumeration of minimal dominating sets in a graph is one of central problems in enumeration study since enumeration of minimal dominating sets corresponds to enumeration of minimal hypergraph transversal. However, enumeration of dominating sets including non-minimal ones has not been received much attention. In this paper, we address enumeration problems for dominating sets from sparse graphs which are degenerate graphs and graphs with large girth, and we propose two algorithms for solving the problems. The first algorithm enumerates all the dominating sets for a $k$-degenerate graph in $O(k)$ time per solution using $O(n + m)$ space, where $n$ and $m$ are respectively the number of vertices and edges in an input graph. That is, the algorithm is optimal for graphs with constant degeneracy such as trees, planar graphs, $H$-minor free graphs with some fixed $H$. The second algorithm enumerates all the dominating sets in constant time per solution for input graphs with girth at least nine.

Finding communities in the form of cohesive subgraphs is a fundamental problem in network analysis. In domains that model networks as undirected graphs, communities are generally associated with dense subgraphs, and many community models have been proposed. Maximal cliques are arguably the most widely studied among such models, with early works dating back to the '60s, and a continuous stream of research up to the present. In domains that model networks as directed graphs, several approaches for community detection have been proposed, but there seems to be no clear model of cohesive subgraph, i.e., of what a community should look like. We extend the fundamental model of clique to directed graphs, adding the natural constraint of strong connectivity within the clique. We characterize the problem by giving a tight bound for the number of such cliques in a graph, and highlighting useful structural properties. We then exploit these properties to produce the first algorithm with polynomial delay for enumerating maximal strongly connected cliques.