Suranga Nath Kasthurirathne

dblp:124/0297 · DBLP profile ↗
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16ranked-venue papers
6as first author
4since 2021 · last 2022
—ORCID · none

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Applied, interdisciplinary, general and emerging computing · 16 · 6 first-author · 4 since 2021
YearPublicationVenuePosition
2022 Evaluation of real-world referential and probabilistic patient matching to advance patient identification strategy
abstract
OBJECTIVE: This study sought both to support evidence-based patient identity policy development by illustrating an approach for formally evaluating operational matching methods, and also to characterize the performance of both referential and probabilistic patient matching algorithms using real-world demographic data. MATERIALS AND METHODS: We assessed matching accuracy for referential and probabilistic matching algorithms using a manually reviewed 30 000 record gold standard reference dataset derived from a large health information exchange containing over 47 million patient registrations. We applied referential and probabilistic algorithms to this dataset and compared the outputs to the gold standard. We computed performance metrics including sensitivity (recall), positive predictive value (precision), and F-score for each algorithm. RESULTS: The probabilistic algorithm exhibited sensitivity, positive predictive value (PPV), and F-score of .6366, 0.9995, and 0.7778, respectively. The referential algorithm exhibited corresponding sensitivity, PPV, and F-score values of 0.9351, 0.9996, and 0.9663, respectively. Treating discordant and limited-data records as nonmatches increased referential match sensitivity to 0.9578. Compared to the more traditional probabilistic approach, referential matching exhibits greater accuracy. CONCLUSIONS: Referential patient matching, an increasingly popular method among health IT vendors, demonstrated notably greater accuracy than a more traditional probabilistic approach without the adaptation of the algorithm to the data that the traditional probabilistic approach usually requires. Health IT policymakers, including the Office of the National Coordinator for Health Information Technology (ONC), should explore strategies to expand the evidence base for real-world matching system performance, given the need for an evidence-based patient identity strategy.
Shaun J. Grannis, Jennifer L. Williams, Suranga Nath Kasthurirathne, Molly Murray, Huiping Xu
J. Am. Medical Informatics Assoc.3
2022 A framework for a consistent and reproducible evaluation of manual review for patient matching algorithms
abstract
Healthcare systems are hampered by incomplete and fragmented patient health records. Record linkage is widely accepted as a solution to improve the quality and completeness of patient records. However, there does not exist a systematic approach for manually reviewing patient records to create gold standard record linkage data sets. We propose a robust framework for creating and evaluating manually reviewed gold standard data sets for measuring the performance of patient matching algorithms. Our 8-point approach covers data preprocessing, blocking, record adjudication, linkage evaluation, and reviewer characteristics. This framework can help record linkage method developers provide necessary transparency when creating and validating gold standard reference matching data sets. In turn, this transparency will support both the internal and external validity of recording linkage studies and improve the robustness of new record linkage strategies.
Agrayan K. Gupta, Suranga Nath Kasthurirathne, Huiping Xu, Xiaochun Li 0003, Matthew Ruppert, Christopher A. Harle, Shaun J. Grannis
J. Am. Medical Informatics Assoc.2
2021 Extracting Social Variables from Clinical Documentation to Better Facilitate Response to Patient Need
Katie Allen, Daniel Hood, Jonathan Cummins, Suranga Nath Kasthurirathne, Peter J. Embí, Joshua R. Vest
AMIA4
2021 Evaluation of Token Collections and Matching Models to Support Privacy-Preserving Record Linkage (PPRL)
Shaun J. Grannis, Abel N. Kho, Jasmin Phua, Suranga Nath Kasthurirathne
AMIA4
2020 Novel Application of Data Quality Metrics to Tailor Standardization of Patient Matching Fields
Shaun J. Grannis, Huiping Xu, Toan Ong, Michael G. Kahn, Lauren R. Lembcke, Suranga Nath Kasthurirathne
AMIA7
2019 Comparison of Free-Text Synthetic Data Produced by Three Generative Adversarial Networks for Collaborative Health Data Analytics
Gregory Dexter, Shaun J. Grannis, Suranga Nath Kasthurirathne
AMIA3
2019 Evaluating the effect of data standardization and validation on patient matching accuracy
abstract
OBJECTIVE: This study evaluated the degree to which recommendations for demographic data standardization improve patient matching accuracy using real-world datasets. MATERIALS AND METHODS: We used 4 manually reviewed datasets, containing a random selection of matches and nonmatches. Matching datasets included health information exchange (HIE) records, public health registry records, Social Security Death Master File records, and newborn screening records. Standardized fields including last name, telephone number, social security number, date of birth, and address. Matching performance was evaluated using 4 metrics: sensitivity, specificity, positive predictive value, and accuracy. RESULTS: Standardizing address was independently associated with improved matching sensitivities for both the public health and HIE datasets of approximately 0.6% and 4.5%. Overall accuracy was unchanged for both datasets due to reduced match specificity. We observed no similar impact for address standardization in the death master file dataset. Standardizing last name yielded improved matching sensitivity of 0.6% for the HIE dataset, while overall accuracy remained the same due to a decrease in match specificity. We noted no similar impact for other datasets. Standardizing other individual fields (telephone, date of birth, or social security number) showed no matching improvements. As standardizing address and last name improved matching sensitivity, we examined the combined effect of address and last name standardization, which showed that standardization improved sensitivity from 81.3% to 91.6% for the HIE dataset. CONCLUSIONS: Data standardization can improve match rates, thus ensuring that patients and clinicians have better data on which to make decisions to enhance care quality and safety.
Shaun J. Grannis, Huiping Xu, Joshua R. Vest, Suranga Nath Kasthurirathne, Na Bo, Ben Moscovitch, Rita Torkzadeh, Josh Rising
J. Am. Medical Informatics Assoc.4
2018 Assessing the capacity of social determinants of health data to augment predictive models identifying patients in need of wraparound social services
abstract
Introduction: A growing variety of diverse data sources is emerging to better inform health care delivery and health outcomes. We sought to evaluate the capacity for clinical, socioeconomic, and public health data sources to predict the need for various social service referrals among patients at a safety-net hospital. Materials and Methods: We integrated patient clinical data and community-level data representing patients' social determinants of health (SDH) obtained from multiple sources to build random forest decision models to predict the need for any, mental health, dietitian, social work, or other SDH service referrals. To assess the impact of SDH on improving performance, we built separate decision models using clinical and SDH determinants and clinical data only. Results: Decision models predicting the need for any, mental health, and dietitian referrals yielded sensitivity, specificity, and accuracy measures ranging between 60% and 75%. Specificity and accuracy scores for social work and other SDH services ranged between 67% and 77%, while sensitivity scores were between 50% and 63%. Area under the receiver operating characteristic curve values for the decision models ranged between 70% and 78%. Models for predicting the need for any services reported positive predictive values between 65% and 73%. Positive predictive values for predicting individual outcomes were below 40%. Discussion: The need for various social service referrals can be predicted with considerable accuracy using a wide range of readily available clinical and community data that measure socioeconomic and public health conditions. While the use of SDH did not result in significant performance improvements, our approach represents a novel and important application of risk predictive modeling.
Suranga Nath Kasthurirathne, Joshua R. Vest, Nir Menachemi, Paul K. Halverson, Shaun J. Grannis
J. Am. Medical Informatics Assoc.1
2018 Response to letter to the Editor on "Assessing the capacity of social determinants of health data to augment predictive models identifying patients in need of wraparound social services"
abstract
Dear Dr Ohno-Machado, We thank Ancker and her colleagues for the insightful comments on our recent article.1 We wholeheartedly agree that the health informatics community should not conclude that social determinants of health (SDH) are not valuable. The literature in this area is growing, and we believe that SDH will continue to play an increasingly significant role in influencing population health. While the specific elements and local context of our work failed to demonstrate clear benefit, our study represented a single community with a novel outcome. As we noted in our article: a more diverse population or geography may have yielded different results; our results may not be generalizable to different outcomes; and that our SDH and public health measures were contextual. This last point is important, as individual and area level measures are different constructs entirely and an analysis, such as ours, is not subject to the ecological fallacy.2 Correlation between predictors is a significant problem; we believe that this was mitigated by our use of Random Forest, which selects random subsets of features to build an ensemble of trees.3 Consistent with the SDH perspective of social, political, and environmental settings, we endeavored to measure, and account for, patient context. We further agree that context is a frequently changing construct and that regularly updated measures are always better. We also believe that more individual level SDH measures would be an improvement. We applaud the Institute of Medicine (IOM) for recommending that SDH be captured in Electronic Health Records,4 as well as the International Classification of Disease (ICD) for enabling SDH collection by introducing additional SDH codes to ICD-10.5 We anticipate that the availability of patient-level SDH will increase as the adoption of these codes increases. Additionally, other patient-level SDH related to an individual’s family/social support may be inferred from his or her family medical history. Conflict of interest statement. None declared.
Suranga Nath Kasthurirathne, Joshua R. Vest, Nir Menachemi, Paul K. Halverson, Shaun J. Grannis
J. Am. Medical Informatics Assoc.1
2017 Overcoming the Maternal Care Crisis: How Can Lessons Learnt in Global Health Informatics Address US Maternal Health Outcomes?
Suranga Nath Kasthurirathne, Burke W. Mamlin, Saptarshi Purkayastha, Theresa A. Cullen
AMIA1
2017 Evaluation of Text Mining Methods to Support Reporting Public Health Notifiable Diseases Using Real-World Clinical Data
Matthias Kochmann, Brian E. Dixon, Suranga Nath Kasthurirathne, Shaun J. Grannis
AMIA4
2017 Toward better public health reporting using existing off the shelf approaches: The value of medical dictionaries in automated cancer detection using plaintext medical data
Suranga Nath Kasthurirathne, Brian E. Dixon, Judy Gichoya, Huiping Xu, Yuni Xia, Burke W. Mamlin, Shaun J. Grannis
J. Biomed. Informatics1
2016 An Evaluation of Activity Trackers for Monitoring Parkinson's Disease Patient Outcomes
Josette F. Jones, Huanmei Wu, Jay S. Patel, Suranga Nath Kasthurirathne, Sunanda Mukherjee
AMIA4
2016 Toward better public health reporting using existing off the shelf approaches: A comparison of alternative cancer detection approaches using plaintext medical data and non-dictionary based feature selection
Suranga Nath Kasthurirathne, Brian E. Dixon, Judy Gichoya, Huiping Xu, Yuni Xia, Burke W. Mamlin, Shaun J. Grannis
J. Biomed. Informatics1
2015 OpenMRS and FHIR: The Promise of a Domain Independent API for serving Healthcare Needs Across Underserved Settings
Suranga Nath Kasthurirathne, Harsha Kumara, Burke W. Mamlin, Paul G. Biondich
AMIA1
2015 Evaluating the Accuracy of Automated Notifiable Condition Detection in Free-Text Electronic Laboratory Report Results Using Contemporary Text Mining and Machine Learning Methods
Uzay Kirbiyik, Patrick Lai, Brian E. Dixon, Shaun J. Grannis, Suranga Nath Kasthurirathne
AMIA5