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Cole H. Christie

dblp:124/1064 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2016
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
structural bioinformatics
0.522016
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank · Bioinform. 2016
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank · Bioinform. 2015
Bioinformatics and computational biology › structural bioinformatics › protein structure representation
protein structure visualization
0.212015
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank · Bioinform. 2015
Bioinformatics and computational biology
genome annotation
0.112016
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank · Bioinform. 2016
Bioinformatics and computational biology
genomics
0.112016
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank · Bioinform. 2016

Methods — techniques the papers use, named apart from their topics

web-based visualization · 0.2data integration · 0.2mobile application development · 0.2
YearPublicationVenuePosition
2016 Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
abstract
The Protein Data Bank (PDB) now contains more than 120,000 three-dimensional (3D) structures of biological macromolecules. To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration platform that maps 3D structural information across various datasets. This integration bridges from the human genome across protein sequence to 3D structure space. We developed novel software solutions for data management and visualization, while incorporating new libraries for web-based visualization using SVG graphics. AVAILABILITY AND IMPLEMENTATION: The new views are available from http://www.rcsb.org and software is available from https://github.com/rcsb/. CONTACT: [email protected] information: Supplementary data are available at Bioinformatics online.
Andreas Prlic, Tara Kalro, Roshni Bhattacharya, Cole H. Christie, Stephen K. Burley, Peter W. Rose
Bioinform.4
2015 RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank
abstract
SUMMARY: The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB's integrated MyPDB service. AVAILABILITY AND IMPLEMENTATION: RCSB PDB Mobile is freely available from the Apple App Store and Google Play (http://www.rcsb.org).
Greg B. Quinn, Chunxiao Bi, Cole H. Christie, Kyle Pang, Andreas Prlic, Takanori Nakane, Christine Zardecki, Maria Voigt, Helen M. Berman, Philip E. Bourne, Peter W. Rose
Bioinform.3