Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data. A simulation from public publication records: the people listed were not invited and did not agree to review.
? Tutorial for this page

Mingyao Tian

dblp:131/2585 · DBLP profile ↗
← Back
1ranked-venue papers
0as first author
1since 2021 · last 2023
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein sequence analysis › protein sequence representation
protein language model
0.712023
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model · Bioinform. 2023
Bioinformatics and computational biology › structural biology › protein structure and function
protein stability prediction
0.712023
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model · Bioinform. 2023
Bioinformatics and computational biology › structural biology
protein structure and function
0.712023
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model · Bioinform. 2023

Methods — techniques the papers use, named apart from their topics

pretrained protein language model · 0.7deep learning · 0.7convolutional neural network · 0.7
YearPublicationVenuePosition
2023 THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model
abstract
MOTIVATION: Quantitative determination of protein thermodynamic stability is a critical step in protein and drug design. Reliable prediction of protein stability changes caused by point variations contributes to developing-related fields. Over the past decades, dozens of structure-based and sequence-based methods have been proposed, showing good prediction performance. Despite the impressive progress, it is necessary to explore wild-type and variant protein representations to address the problem of how to represent the protein stability change in view of global sequence. With the development of structure prediction using learning-based methods, protein language models (PLMs) have shown accurate and high-quality predictions of protein structure. Because PLM captures the atomic-level structural information, it can help to understand how single-point variations cause functional changes. RESULTS: Here, we proposed THPLM, a sequence-based deep learning model for stability change prediction using Meta's ESM-2. With ESM-2 and a simple convolutional neural network, THPLM achieved comparable or even better performance than most methods, including sequence-based and structure-based methods. Furthermore, the experimental results indicate that the PLM's ability to generate representations of sequence can effectively improve the ability of protein function prediction. AVAILABILITY AND IMPLEMENTATION: The source code of THPLM and the testing data can be accessible through the following links: https://github.com/FPPGroup/THPLM.
Jianting Gong, Yongbing Chen, Zhiguo Fu, Zilin Ren, Mingyao Tian
Bioinform.11