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Zhiwei Ding

dblp:135/8892 · DBLP profile ↗
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6ranked-venue papers
1as first author
6since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 4 · 4 since 2021Databases, data management, data science and information retrieval · 1 · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
3 papers
Bioinformatics and computational biology · 100%
Artificial intelligence
3 papers
Probabilistic and Bayesian machine learning · 38% Representation and self-supervised learning · 32% Generative modeling · 21%

Topics — the 8 heaviest of 9, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
computational neuroscience
1.322024
Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos · NeurIPS 2024
A flow-based latent state generative model of neural population responses to natural images · NeurIPS 2021
Machine learning › Probabilistic and Bayesian machine learning
clustering
0.812024
Most discriminative stimuli for functional cell type clustering · ICLR 2024
Machine learning › Representation and self-supervised learning
multimodal representation learning
0.812024
SGIR: Star Graph-Based Interaction for Efficient and Robust Multimodal Representation · IEEE Trans. Multim. 2024
Bioinformatics and computational biology › computational neuroscience › neural response modeling
neural response prediction
0.812024
Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos · NeurIPS 2024
Bioinformatics and computational biology
neuroscience
0.812024
Most discriminative stimuli for functional cell type clustering · ICLR 2024
Machine learning › Generative modeling
normalizing flow
0.512021
A flow-based latent state generative model of neural population responses to natural images · NeurIPS 2021
Bioinformatics and computational biology › computational neuroscience › neural response modeling
neural system identification
0.512021
A flow-based latent state generative model of neural population responses to natural images · NeurIPS 2021
Machine learning › Probabilistic and Bayesian machine learning › structured models
latent variable model
0.112021
A flow-based latent state generative model of neural population responses to natural images · NeurIPS 2021

Methods — techniques the papers use, named apart from their topics

stimulus optimization · 1.5expectation-maximization · 1.5normalizing flow · 1.0deep neural network · 1.0star graph interaction · 0.8benchmark competition · 0.8artificial neural network · 0.8
YearPublicationVenuePosition
2025 Cross-Domain Graph Neural Networks for Notification at LinkedIn
abstract
Notification recommendation systems are critical to driving user engagement on professional platforms like LinkedIn. Designing such systems involves integrating heterogeneous signals across domains, capturing temporal dynamics, and optimizing for multiple, often competing, objectives. Graph Neural Networks (GNNs) provide a powerful framework for modeling complex interactions in such environments.
Shihai He, Julie Choi, Zhiwei Ding, Peng Du 0004, Priya Bannur, Franco Liang, Fedor Borisyuk, Padmini Jaikumar, Xiaobing Xue, Viral Gupta
CIKM4
2025 Valence-Arousal Disentangled Representation Learning for Emotion Recognition in SSVEP-Based BCIs
abstract
Steady state visually evoked potential (SSVEP)-based brain-computer interfaces (BCIs), which are widely used in rehabilitation and disability assistance, can benefit from real-time emotion recognition to enhance human-machine interaction. However, the learned discri-minative latent representations in SSVEP-BCIs may generalize in an unintended direction, which can lead to reduced accuracy in detecting emotional states. In this paper, we introduce a Valence-Arousal Disentangled Representation Learning (VADL) method, drawing inspir-ation from the classical two-dimensional emotional model, to enhance the performance and generalization of emotion recognition within SSVEP-BCIs. VADL distinctly disentangles the latent variables of valence and arousal information to improve accuracy. It utilizes the structured state space duality model to thoroughly extract global emotional features. Additionally, we propose a Multisubject Gradient Blending training strategy that individually tailors the learning pace of reconstruction and discrimination tasks within VADL on-the-fly. To verify the feasibility of our method, we have developed a comprehensive database comprising 23 subjects, in which both the emotional states and SSVEPs were effectively elicited. Experimental results indicate that VADL surpasses existing state-of-the-art benchmark algorithms.
Zhengwu Liu, Ngai Wong 0001, Zhiwei Ding, Jian Liu 0026, Edith C. H. Ngai
IEEE J. Biomed. Health Informatics6
2024 Most discriminative stimuli for functional cell type clustering
abstract
Identifying cell types and understanding their functional properties is crucial for unraveling the mechanisms underlying perception and cognition. In the retina, functional types can be identified by carefully selected stimuli, but this requires expert domain knowledge and biases the procedure towards previously known cell types. In the visual cortex, it is still unknown what functional types exist and how to identify them. Thus, for unbiased identification of the functional cell types in retina and visual cortex, new approaches are needed. Here we propose an optimization-based clustering approach using deep predictive models to obtain functional clusters of neurons using Most Discriminative Stimuli (MDS). Our approach alternates between stimulus optimization with cluster reassignment akin to an expectation-maximization algorithm. The algorithm recovers functional clusters in mouse retina, marmoset retina and macaque visual area V4. This demonstrates that our approach can successfully find discriminative stimuli across species, stages of the visual system and recording techniques. The resulting most discriminative stimuli can be used to assign functional cell types fast and on the fly, without the need to train complex predictive models or show a large natural scene dataset, paving the way for experiments that were previously limited by experimental time. Crucially, MDS are interpretable: they visualize the distinctive stimulus patterns that most unambiguously identify a specific type of neuron.
Max F. Burg, Thomas Zenkel, Michaela Vystrcilová, Jonathan Oesterle, Larissa Höfling, Konstantin Willeke, Jan Lause, Sarah Müller, Paul G. Fahey, Zhiwei Ding, Kelli Restivo, Shashwat Sridhar, Tim Gollisch, Philipp Berens, Andreas S. Tolias, Thomas Euler, Matthias Bethge, Alexander S. Ecker
ICLR10
2024 Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos
abstract
Understanding how biological visual systems process information is challenging because of the nonlinear relationship between visual input and neuronal responses. Artificial neural networks allow computational neuroscientists to create predictive models that connect biological and machine vision.Machine learning has benefited tremendously from benchmarks that compare different models on the same task under standardized conditions. However, there was no standardized benchmark to identify state-of-the-art dynamic models of the mouse visual system.To address this gap, we established the SENSORIUM 2023 Benchmark Competition with dynamic input, featuring a new large-scale dataset from the primary visual cortex of ten mice. This dataset includes responses from 78,853 neurons to 2 hours of dynamic stimuli per neuron, together with behavioral measurements such as running speed, pupil dilation, and eye movements.The competition ranked models in two tracks based on predictive performance for neuronal responses on a held-out test set: one focusing on predicting in-domain natural stimuli and another on out-of-distribution (OOD) stimuli to assess model generalization.As part of the NeurIPS 2023 Competition Track, we received more than 160 model submissions from 22 teams. Several new architectures for predictive models were proposed, and the winning teams improved the previous state-of-the-art model by 50\%. Access to the dataset as well as the benchmarking infrastructure will remain online at www.sensorium-competition.net.
Polina Turishcheva, Paul G. Fahey, Michaela Vystrcilová, Laura Hansel, Rachel Froebe, Kayla Ponder, Yongrong Qiu, Konstantin Willeke, Mohammad Bashiri, Ruslan Baikulov, Yu Zhu 0008, Lei Ma 0008, Tiejun Huang 0001, Bryan Li, Wolf De Wulf, Nina Kudryashova, Matthias H. Hennig, Nathalie Rochefort, Arno Onken, Eric Y. Wang, Zhiwei Ding, Andreas S. Tolias, Fabian H. Sinz, Alexander S. Ecker
NeurIPS22
2024 SGIR: Star Graph-Based Interaction for Efficient and Robust Multimodal Representation
abstract
Multimodal representation aims to integrate information from multiple modalities to improve overall performance. Recent works utilizing pairwise interactions have been proposed to deal with the long-range inter-modal and intra-modal dependencies in modeling multimodal data. However, these works usually feature high model complexity, and they are not robust to noisy multimodal data. To address these problems, we propose a novel multimodal representation method that learns private and hub representations of modalities. These representations and their connections form a star graph, a basis for Star Graph-based Interaction (SGI). SGI not only captures the long-range dependencies in multimodal data but also has two natural properties. Firstly, the number of modal interactions increases linearly with the number of modalities, which is computationally efficient compared with the square increase rate of pairwise interactions in previous works. Secondly, the indirect modal interactions through the hub representation in SGI (rather than the direct pairwise interactions between modalities) ensure the model's robustness to noisy modalities. Experiments on five benchmark datasets demonstrate that our new SGI representation (SGIR) achieves state-of-the-art performance on various multimodal tasks, and our qualitative and quantitative analyses show the excellent generalization ability of SGIR. Further experiments reveal that SGIR still outperforms widely used baseline models when modalities are corrupted by low levels of noise.
Zhiwei Ding, Guilin Lan, Yanzhi Song, Zhouwang Yang
IEEE Trans. Multim.1
2021 A flow-based latent state generative model of neural population responses to natural images
abstract
We present a joint deep neural system identification model for two major sources of neural variability: stimulus-driven and stimulus-conditioned fluctuations. To this end, we combine (1) state-of-the-art deep networks for stimulus-driven activity and (2) a flexible, normalizing flow-based generative model to capture the stimulus-conditioned variability including noise correlations. This allows us to train the model end-to-end without the need for sophisticated probabilistic approximations associated with many latent state models for stimulus-conditioned fluctuations. We train the model on the responses of thousands of neurons from multiple areas of the mouse visual cortex to natural images. We show that our model outperforms previous state-of-the-art models in predicting the distribution of neural population responses to novel stimuli, including shared stimulus-conditioned variability. Furthermore, it successfully learns known latent factors of the population responses that are related to behavioral variables such as pupil dilation, and other factors that vary systematically with brain area or retinotopic location. Overall, our model accurately accounts for two critical sources of neural variability while avoiding several complexities associated with many existing latent state models. It thus provides a useful tool for uncovering the interplay between different factors that contribute to variability in neural activity.
Mohammad Bashiri, Edgar Y. Walker, Konstantin-Klemens Lurz, Akshay K. Jagadish, Taliah Muhammad, Zhiwei Ding, Zhuokun Ding, Andreas S. Tolias, Fabian H. Sinz
NeurIPS6