John L. Sapp

dblp:150/3232 · DBLP profile ↗
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18ranked-venue papers
0as first author
5since 2021 · last 2026
0000-0002-9602-2751ORCID · verified

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Applied, interdisciplinary, general and emerging computing · 17 · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 9 · 2 since 2021Artificial intelligence and machine learning · 1Databases, data management, data science and information retrieval · 1
YearPublicationVenuePosition
2026 AI-Based QRS Onset Detection in the Early Ventricular Activation Site ECGs
abstract
Identifying the onset of the QRS complex is an important step for localizing the site of origin (SOO) of premature ventricular complexes (PVCs) and the exit site of Ventricular Tachycardia (VT). However, identifying the QRS onset is challenging due to signal noise, baseline wander, motion artifact, and muscle artifact. Furthermore, in VT, QRS onset detection is especially difficult due to the overlap with repolarization from the prior beat. In this study, 7706 captured bipolar pacing beats (Stim-QRS < 40 ms) pooled from 384 anatomically widely dispersed pacing sites of 15 patients were used for an attention-based Swin-Unet neural network. We also utilized a self-supervised pretraining technique using 88253 unannotated ECG records. The algorithm correctly identified most of the onsets for ECG signals with bipolar pacing-site ECG dataset, achieving a sensitivity of 0.958 and a 1.924 ± 4.275 milliseconds prediction error. Our algorithm also achieved a prediction error of 1.518 ± 8.702 milliseconds for the QT Database (QTDB), and a prediction error of 1.333 ± 7.575 milliseconds for the Lobachevsky University Electrocardiography Database (LUDB) public datasets. We also achieved high inter-dataset performance, which supports the practical performance of the method, with a sensitivity of 0.927 for QTDB and a sensitivity of 0.981 for LUDB. The AI model achieves accurate onset detection in paced ECGs with spike-removed inputs, providing a controlled, high-fidelity training setting for future efforts in generalizing to VT ECGs. The use of self-supervised pretraining further improves the detector's accuracy, showcasing the applicability of the approach and using unannotated ECG signals for downstream tasks.
Serhii Reznichenko, John Whitaker, Zixuan Ni, Amir AbdelWahab, Usha B. Tedrow, John L. Sapp
IEEE J. Biomed. Health Informatics6
2025 A Novel 3D Camera-Based ECG-Imaging System for Electrode Position Discovery and Heart-Torso Registration
abstract
ECG-imaging has been receiving increasing clinical and commercialization interest as a non-invasive technology for computing cardiac electrical activity and facilitating clinical management of heart rhythm disorders. Despite its potential, the standard ECG-imaging pipeline requires thorax imaging for constructing patient-specific heart-thorax geometry - being outside standard-of-care clinical workflow, this component constitutes a major barrier to the clinical adoption of ECG-imaging. The advent of 3D cameras into ECG-imaging workflow to replace thorax imaging has shown promise, although existing works largely neglect the registration between camera-derived thorax models with an individual's heart geometry. In this work, we address this gap with a novel system that generates patient-specific torso geometry using a 3D camera, registers the torso to heart geometry obtained from pre-existing cardiac scans, and optimally deforms the torso to the skin surface of the patient. We evaluated the presented camera-based ECG-imaging system on five patients undergoing ablation of scar-related ventricular tachycardia, where we evaluate both the accuracy of the surface electrode localization and the ECG-imaging solutions in comparison to those obtained from computed tomography based thorax imaging. We further evaluate the use of the presented camera-based patient-specific heart-thorax model versus a generic heart-thorax model, highlighting the importance of the registration between the camera-based thorax models with cardiac scans.
Nikhil Shenoy, Maryam Toloubidokhti, Omar Gharbia, MirMilad P. Khoshknab, Saman Nazarian, John L. Sapp, Ankur Kapoor
IEEE J. Biomed. Health Informatics6
2024 Hybrid Neural State-Space Modeling for Supervised and Unsupervised Electrocardiographic Imaging
abstract
State-space modeling (SSM) provides a general framework for many image reconstruction tasks. Error in a priori physiological knowledge of the imaging physics, can bring incorrectness to solutions. Modern deep-learning approaches show great promise but lack interpretability and rely on large amounts of labeled data. In this paper, we present a novel hybrid SSM framework for electrocardiographic imaging (ECGI) to leverage the advantage of state-space formulations in data-driven learning. We first leverage the physics-based forward operator to supervise the learning. We then introduce neural modeling of the transition function and the associated Bayesian filtering strategy. We applied the hybrid SSM framework to reconstruct electrical activity on the heart surface from body-surface potentials. In unsupervised settings of both in-silico and in-vivo data without cardiac electrical activity as the ground truth to supervise the learning, we demonstrated improved ECGI performances of the hybrid SSM framework trained from a small number of ECG observations in comparison to the fixed SSM. We further demonstrated that, when in-silico simulation data becomes available, mixed supervised and unsupervised training of the hybrid SSM achieved a further 40.6% and 45.6% improvements, respectively, in comparison to traditional ECGI baselines and supervised data-driven ECGI baselines for localizing the origin of ventricular activations in real data.
Xiajun Jiang, Ryan Missel, Maryam Toloubidokhti, Karli Gillette, Anton J. Prassl, Gernot Plank, B. Milan Horácek, John L. Sapp
IEEE Trans. Medical Imaging8
2022 Few-Shot Generation of Personalized Neural Surrogates for Cardiac Simulation via Bayesian Meta-learning
Xiajun Jiang, Zhiyuan Li 0007, Ryan Missel, Md Shakil Zaman, Brian Zenger, Wilson Good, Robert S. MacLeod, John L. Sapp
MICCAI (8)8
2021 Label-Free Physics-Informed Image Sequence Reconstruction with Disentangled Spatial-Temporal Modeling
Xiajun Jiang, Ryan Missel, Maryam Toloubidokhti, Zhiyuan Li 0007, Omar Gharbia, John L. Sapp
MICCAI (6)6
2020 Embedding high-dimensional Bayesian optimization via generative modeling: Parameter personalization of cardiac electrophysiological models
Jwala Dhamala, Pradeep Bajracharya, Hermenegild Arevalo, John L. Sapp, B. Milan Horácek, Katherine C. Wu, Natalia A. Trayanova
Medical Image Anal.4
2019 Improving Disentangled Representation Learning with the Beta Bernoulli Process
abstract
To improve the ability of variational auto-encoders (VAE) to disentangle in the latent space, existing works mostly focus on enforcing the independence among the learned latent factors. However, the ability of these models to disentangle often decreases as the complexity of the generative factors increases. In this paper, we investigate the little-explored effect of the modeling capacity of a posterior density on the disentangling ability of the VAE. We note that the independence within and the complexity of the latent density are two different properties we constrain when regularizing the posterior density: while the former promotes the disentangling ability of VAE, the latter - if overly limited - creates an unnecessary competition with the data reconstruction objective in VAE. Therefore, if we preserve the independence but allow richer modeling capacity in the posterior density, we will lift this competition and thereby allow improved independence and data reconstruction at the same time. We investigate this theoretical intuition with a VAE that utilizes a non-parametric latent factor model, the Indian Buffet Process (IBP), as a latent density that is able to grow with the complexity of the data. Across two widely-used benchmark data sets (MNIST and dSprites) and two clinical data sets little explored for disentangled learning, we qualitatively and quantitatively demonstrated the improved disentangling performance of IBP-VAE over the state of the art. In the latter two clinical data sets riddled with complex factors of variations, we further demonstrated that unsupervised disentangling of nuisance factors via IBP-VAE - when combined with a supervised objective - can not only improve task accuracy in comparison to relevant supervised deep architectures, but also facilitate knowledge discovery related to task decision-making.
Prashnna Gyawali, Zhiyuan Li 0007, Cameron Knight, Sandesh Ghimire, B. Milan Horácek, John L. Sapp
ICDM6
2019 Bayesian Optimization on Large Graphs via a Graph Convolutional Generative Model: Application in Cardiac Model Personalization
Jwala Dhamala, Sandesh Ghimire, John L. Sapp, B. Milan Horácek
MICCAI (2)3
2019 Noninvasive Reconstruction of Transmural Transmembrane Potential With Simultaneous Estimation of Prior Model Error
abstract
To reconstruct electrical activity in the heart from body-surface electrocardiograms (ECGs) is an ill-posed inverse problem. Electrophysiological models have been found effective in regularizing these inverse problems by incorporating a priori knowledge about how the electrical potential in the heart propagates over time. However, these models suffer from model errors arising from, for example, parameters associated with tissue properties and the earliest sites of excitation. We present a Bayesian approach to simultaneously estimate transmembrane potential (TMP) signals and prior model errors, exploiting sparsity of the error in the gradient domain in the form of a novel sparse prior based on variational lower bound of the generalized Gaussian distribution. In synthetic and real-data experiments, we demonstrate the improvement of accuracy in TMP reconstruction brought by simultaneous model error estimation. We further provide theoretical and empirical justifications for the change of performances in the presented method at the presence of different model errors.
Sandesh Ghimire, John L. Sapp, B. Milan Horácek
IEEE Trans. Medical Imaging2
2018 High-Dimensional Bayesian Optimization of Personalized Cardiac Model Parameters via an Embedded Generative Model
Jwala Dhamala, Sandesh Ghimire, John L. Sapp, B. Milan Horácek
MICCAI (2)3
2018 Generative Modeling and Inverse Imaging of Cardiac Transmembrane Potential
Sandesh Ghimire, Jwala Dhamala, Prashnna Gyawali, John L. Sapp, B. Milan Horácek
MICCAI (2)4
2018 Quantifying the uncertainty in model parameters using Gaussian process-based Markov chain Monte Carlo in cardiac electrophysiology
Jwala Dhamala, Hermenegild Arevalo, John L. Sapp, B. Milan Horácek, Katherine C. Wu, Natalia A. Trayanova
Medical Image Anal.3
2017 A Variational Approach to Sparse Model Error Estimation in Cardiac Electrophysiological Imaging
Sandesh Ghimire, John L. Sapp, B. Milan Horácek
MICCAI (2)2
2017 Spatially Adaptive Multi-Scale Optimization for Local Parameter Estimation in Cardiac Electrophysiology
abstract
To obtain a patient-specific cardiac electro-physiological (EP) model, it is important to estimate the 3-D distributed tissue properties of the myocardium. Ideally, the tissue property should be estimated at the resolution of the cardiac mesh. However, such high-dimensional estimation faces major challenges in identifiability and computation. Most existing works reduce this dimension by partitioning the cardiac mesh into a pre-defined set of segments. The resulting low-resolution solutions have a limited ability to represent the underlying heterogeneous tissue properties of varying sizes, locations, and distributions. In this paper, we present a novel framework that, going beyond a uniform low-resolution approach, is able to obtain a higher resolution estimation of tissue properties represented by spatially non-uniform resolution. This is achieved by two central elements: 1) a multi-scale coarse-to-fine optimization that facilitates higher resolution optimization using the lower resolution solution and 2) a spatially adaptive decision criterion that retains lower resolution in homogeneous tissue regions and allows higher resolution in heterogeneous tissue regions. The presented framework is evaluated in estimating the local tissue excitability properties of a cardiac EP model on both synthetic and real data experiments. Its performance is compared with optimization using pre-defined segments. Results demonstrate the feasibility of the presented framework to estimate local parameters and to reveal heterogeneous tissue properties at a higher resolution without using a high number of unknowns.
Jwala Dhamala, Hermenegild Arevalo, John L. Sapp, B. Milan Horácek, Katherine C. Wu, Natalia A. Trayanova
IEEE Trans. Medical Imaging3
2016 Spatially-Adaptive Multi-scale Optimization for Local Parameter Estimation: Application in Cardiac Electrophysiological Models
abstract
The estimation of local parameter values for a 3D cardiac model is important for revealing abnormal tissues with altered material properties and for building patient-specific models. Existing works in local parameter estimation typically represent the heart with a small number of pre-defined segments to reduce the dimension of unknowns. Such low-resolution approaches have limited ability to estimate tissues with varying sizes, locations, and distributions. We present a novel optimization framework to achieve a higher-resolution parameter estimation without using a high number of unknowns. It has two central elements: (1) a multi-scale coarse-to-fine optimization that uses low-resolution solutions to facilitate the higher-resolution optimization; and (2) a spatially-adaptive scheme that dedicates higher resolution to regions of heterogeneous tissue properties whereas retaining low resolution in homogeneous regions. Synthetic and real-data experiments demonstrate the ability of the presented framework to improve the accuracy of local parameter estimation in comparison to optimization based on fixed-segment models.
Jwala Dhamala, John L. Sapp, B. Milan Horácek
MICCAI (3)2
2016 Examining the Impact of Prior Models in Transmural Electrophysiological Imaging: A Hierarchical Multiple-Model Bayesian Approach
abstract
Noninvasive cardiac electrophysiological (EP) imaging aims to mathematically reconstruct the spatiotemporal dynamics of cardiac sources from body-surface electrocardiographic (ECG) data. This ill-posed problem is often regularized by a fixed constraining model. However, a fixed-model approach enforces the source distribution to follow a pre-assumed structure that does not always match the varying spatiotemporal distribution of actual sources. To understand the model-data relation and examine the impact of prior models, we present a multiple-model approach for volumetric cardiac EP imaging where multiple prior models are included and automatically picked by the available ECG data. Multiple models are incorporated as an Lp-norm prior for sources, where p is an unknown hyperparameter with a prior uniform distribution. To examine how different combinations of models may be favored by different measurement data, the posterior distribution of cardiac sources and hyperparameter p is calculated using a Markov Chain Monte Carlo (MCMC) technique. The importance of multiple-model prior was assessed in two sets of synthetic and real-data experiments, compared to fixed-model priors (using Laplace and Gaussian priors). The results showed that the posterior combination of models (the posterior distribution of p) as determined by the ECG data differed substantially when reconstructing sources with different sizes and structures. While the use of fixed models is best suited in situations where the prior assumption fits the actual source structures, the use of an automatically adaptive set of models may have the ability to better address model-data mismatch and to provide consistent performance in reconstructing sources with different properties.
Azar Rahimi, John L. Sapp, Jingjia Xu, Peter Bajorski, B. Milan Horácek
IEEE Trans. Medical Imaging2
2015 Robust Transmural Electrophysiological Imaging: Integrating Sparse and Dynamic Physiological Models into ECG-Based Inference
abstract
Noninvasive inference of patient-specific intramural electrical activity from surface electrocardiograms (ECG) lacks a unique solution in the absence of prior assumptions. While 3D cardiac electrophysiological models emerged to be a viable vehicle for constraining this inference with knowledge about the spatiotemporal dynamics of cardiac excitation, it is important for the inference to be robust to errors in these high-dimensional model predictions given the limited ECG data. We present an innovative solution to this problem by exploiting the low-dimensional structure of the solution space – a powerful regularizer in overcoming the lack of measurements – within the dynamic inference guided by physiological models. We present the first Bayesian inference framework that allows the exploration of both the spatial sparsity of cardiac excitation and its complex nonlinear spatiotemporal dynamics for an improved inference of patient-specific intramural electrical activity. The benefit of this integration is verified in both synthetic and real-data experiments, where we present one of the first detailed, point-by-point comparison of the reconstructed electrical activity to in-vivo catheter mapping data. These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
Jingjia Xu, John L. Sapp, Azar Rahimi, B. Milan Horácek
MICCAI (2)2
2014 Variational Bayesian Electrophysiological Imaging of Myocardial Infarction
Jingjia Xu, John L. Sapp, Azar Rahimi
MICCAI (2)2