Accurate canal network mapping is essential for water management, including irrigation planning and infrastructure maintenance. State-of-the-art semantic segmentation models for infrastructure mapping, such as roads, rely on large, well-annotated remote sensing datasets. However, incomplete or inadequate ground truth can hinder these learning approaches. Many infrastructure networks have graph-level properties such as reachability to a source (like canals) or connectivity (roads) that can be leveraged to improve these existing ground truth. This paper develops a novel iterative framework IGraSS, combining a semantic segmentation module—incorporating RGB and additional modalities (NDWI, DEM)—with a graph-based ground-truth refinement module. The segmentation module processes satellite imagery patches, while the refinement module operates on the entire data viewing the infrastructure network as a graph. Experiments show that IGraSS reduces unreachable canal segments from ~18% to ~3%, and training with refined ground truth significantly improves canal identification. IGraSS serves as a robust framework for both refining noisy ground truth and mapping canal networks from remote sensing imagery. We also demonstrate the effectiveness and generalizability of IGraSS using road networks as an example, applying a different graph-theoretic constraint to complete road networks.

During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.

Despite hundreds of methods published in the literature, forecasting epidemic dynamics remains challenging yet important. The challenges stem from multiple sources, including: the need for timely data, co-evolution of epidemic dynamics with behavioral and immunological adaptations, and the evolution of new pathogen strains. The ongoing COVID-19 pandemic highlighted these challenges; in an important article, Reich et al. did a comprehensive analysis highlighting many of these challenges. In this paper, we take another step in critically evaluating existing epidemic forecasting methods. Our methods are based on a simple yet crucial observation - epidemic dynamics go through a number of phases (waves). Armed with this understanding, we propose a modification to our deployed Bayesian ensembling case time series forecasting framework. We show that ensembling methods employing the phase information and using different weighting schemes for each phase can produce improved forecasts. We evaluate our proposed method with both the currently deployed model and the COVID-19 forecasthub models. The overall performance of the proposed model is consistent across the pandemic but more importantly, it is ranked third and first during two critical rapid growth phases in cases, regimes where the performance of most models from the CDC forecasting hub dropped significantly.

Infectious disease forecasting has been a key focus in the recent past owing to the COVID-19 pandemic and has proved to be an important tool in controlling the pandemic. With the advent of reliable spatiotemporal data, graph neural network models have been able to successfully model the inter-relation between the cross-region signals to produce quality forecasts, but like most deep-learning models they do not explicitly incorporate the underlying causal mechanisms. In this work, we employ a causal mechanistic model to guide the learning of the graph embeddings and propose a novel learning framework -- Causal-based Graph Neural Network (CausalGNN) that learns spatiotemporal embedding in a latent space where graph input features and epidemiological context are combined via a mutually learning mechanism using graph-based non-linear transformations. We design an attention-based dynamic GNN module to capture spatial and temporal disease dynamics. A causal module is added to the framework to provide epidemiological context for node embedding via ordinary differential equations. Extensive experiments on forecasting daily new cases of COVID-19 at global, US state, and US county levels show that the proposed method outperforms a broad range of baselines. The learned model which incorporates epidemiological context organizes the embedding in an efficient way by keeping the parameter size small leading to robust and accurate forecasting performance across various datasets.

Real-time forecasting of non-stationary time series is a challenging problem, especially when the time series evolves rapidly. For such cases, it has been observed that ensemble models consisting of a diverse set of model classes can perform consistently better than individual models. In order to account for the nonstationarity of the data and the lack of availability of training examples, the models are retrained in real-time using the most recent observed data samples. Motivated by the robust performance properties of ensemble models, we developed a Bayesian model averaging ensemble technique consisting of statistical, deep learning, and compartmental models for fore-casting epidemiological signals, specifically, COVID-19 signals. We observed the epidemic dynamics go through several phases (waves). In our ensemble model, we observed that different model classes performed differently during the various phases. Armed with this understanding, in this paper, we propose a modification to the ensembling method to employ this phase information and use different weighting schemes for each phase to produce improved forecasts. However, predicting the phases of such time series is a significant challenge, especially when behavioral and immunological adaptations govern the evolution of the time series. We explore multiple datasets that can serve as leading indicators of trend changes and employ transfer entropy techniques to capture the relevant indicator. We propose a phase prediction algorithm to estimate the phases using the leading indicators. Using the knowledge of the estimated phase, we selectively sample the training data from similar phases. We evaluate our proposed methodology on our currently deployed COVID-19 forecasting model and the COVID-19 ForecastHub models. The overall performance of the proposed model is consistent across the pandemic. More importantly, it is ranked second during two critical rapid growth phases in cases, regimes where the performance of most models from the ForecastHub dropped significantly.

Timely, high-resolution forecasts of infectious disease incidence are useful for policy makers in deciding intervention measures and estimating healthcare resource burden. In this paper, we consider the task of forecasting COVID-19 confirmed cases at the county level for the United States. Although multiple methods have been explored for this task, their performance has varied across space and time due to noisy data and the inherent dynamic nature of the pandemic. We present a forecasting pipeline which incorporates probabilistic forecasts from multiple statistical, machine learning and mechanistic methods through a Bayesian ensembling scheme, and has been operational for nearly 6 months serving local, state and federal policymakers in the United States. While showing that the Bayesian ensemble is at least as good as the individual methods, we also show that each individual method contributes significantly for different spatial regions and time points. We compare our model's performance with other similar models being integrated into CDC-initiated COVID-19 Forecast Hub, and show better performance at longer forecast horizons. Finally, we also describe how such forecasts are used to increase lead time for training mechanistic scenario projections. Our work demonstrates that such a real-time high resolution forecasting pipeline can be developed by integrating multiple methods within a performance-based ensemble to support pandemic response.

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep learning-based time series models for forecasting have recently gained popularity and have been successfully used for epidemic forecasting. Here we focus on the design and analysis of deep learning-based models for COVID-19 forecasting. We implement multiple recurrent neural network-based deep learning models and combine them using the stacking ensemble technique. In order to incorporate the effects of multiple factors in COVID-19 spread, we consider multiple sources such as COVID-19 confirmed and death case count data and testing data for better predictions. To overcome the sparsity of training data and to address the dynamic correlation of the disease, we propose clustering-based training for high-resolution forecasting. The methods help us to identify the similar trends of certain groups of regions due to various spatio-temporal effects. We examine the proposed method for forecasting weekly COVID-19 new confirmed cases at county-, state-, and country-level. A comprehensive comparison between different time series models in COVID-19 context is conducted and analyzed. The results show that simple deep learning models can achieve comparable or better performance when compared with more complicated models. We are currently integrating our methods as a part of our weekly forecasts that we provide state and federal authorities.

In speech production, epochs are glottal closure instants where significant energy is released from the lungs. Extracting an epoch accurately is important in speech synthesis, analysis, and pitch oriented studies. The time-varying characteristics of the source and the system, and channel attenuation of low-frequency components by telephone channels make estimation of epoch from a speech signal a challenging task. In this paper, we propose a new technique that employs a Gammatone wavelet filterbank and compute a scattering sequence whose local maxima define the candidate epochs in the speech signal. Results are presented for both normal and telephone channel speech by considering the differential electroglottograph from CMU-Arctic database as the ground-truth. The proposed method gives significant improvements with respect to multiple performance metrics when compared with state-of-the-art techniques for epoch estimation.

We propose a deep learning architecture capable of performing up to 8× single image super-resolution. Our architecture incorporates an adversarial component from the super-resolution generative adversarial networks (SRGANs) and a multi-scale learning component from the multiple scale super-resolution network (MSSRNet), which only together can recover smaller structures inherent in satellite images. To further enhance our performance, we integrate progressive growing and training to our network. This, aided by feed forwarding connections in the network to move along and enrich information from previous inputs, produces super-resolved images at scaling factors of 2, 4, and 8. To ensure and enhance the stability of GANs, we employ Wasserstein GANs (WGANs) during training. Experimentally, we find that our architecture can recover small objects in satellite images during super-resolution whereas previous methods cannot.

Self-reset analog-to-digital converters (ADCs) allow for digitization of a signal with a high dynamic range. The reset action is equivalent to a modulo operation performed on the signal. We consider the problem of recovering the original signal from the measured modulo-operated signal. In our formulation, we assume that the underlying signal is Lipschitz continuous. The modulo-operated signal can be expressed as the sum of the original signal and a piecewise-constant signal that captures the transitions. The reconstruction requires estimating the piecewise-constant signal. We rely on local smoothness of the modulo-operated signal and employ wavelets with sufficient vanishing moments to suppress the polynomial component. We employ Daubechies wavelets, which are most compact for a given number of vanishing moments. The wavelet filtering provides a sequence consisting of a sum of scaled and shifted versions of a kernel derived from the wavelet filter. The transition locations are estimated from the sequence using a sparse recovery technique. We derive a sufficient condition on the sampling frequency for ensuring perfect reconstruction of the smooth signal. We validate our reconstruction technique on a signal consisting of sinusoids in both clean and noisy conditions and compare the reconstruction quality with the recently developed repeated finite-difference method.

The blurred images obtained using conventional cameras usually lack high-frequency details due to the impulse response associated with long exposure. This leads to imperfect reconstruction of the underlying scene. It has been shown that flutter-shutter (FS) cameras retain the high-frequency details by physically controlling the characteristics of exposure. This technique has been explored for conditions of fixed camera with objects moving in 1-D. In this paper, we propose a technique that is applicable to 2-D motion. First, we propose the use of fast iterative shrinkage thresholding algorithm (FISTA) for reconstruction of the underlying image convolved with slightly complex blurs. Second, we propose a new acquisition technique, called controlled blurring, which preserves high-frequency image content better than a flutter-shutter camera.