Demo Data from VLDB 2026 / reviewers in the wild / expert
Dorothee Childs
dblp:164/0890
· DBLP profile ↗
1ranked-venue papers
1as first author
0since 2021 · last 2015
—ORCID · unresolved
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 3, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › network bioinformatics › biological network analysis › network analysis
network stability |
0.2 | 1 | 2015 | Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns · Bioinform. 2015 |
Bioinformatics and computational biology › systems biology
metabolic network analysis |
0.1 | 1 | 2015 | Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns · Bioinform. 2015 |
Methods — techniques the papers use, named apart from their topics
monte carlo sampling · 0.2jacobian matrix analysis · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2015 | Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patternsabstractMOTIVATION: Structural kinetic modelling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a representation of the system's Jacobian matrix that depends solely on the network structure, steady state measurements, and the elasticities at the steady state. For a measured steady state, stability criteria can be derived by generating a large number of SKMs with randomly sampled elasticities and evaluating the resulting Jacobian matrices. The elasticity space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Here, we extend this approach by examining the kinetic feasibility of the elasticity combinations created during Monte Carlo sampling. RESULTS: Using a set of small example systems, we show that the majority of sampled SKMs would yield negative kinetic parameters if they were translated back into kinetic models. To overcome this problem, a simple criterion is formulated that mitigates such infeasible models. After evaluating the small example pathways, the methodology was used to study two steady states of the neuronal TCA cycle and the intrinsic mechanisms responsible for their stability or instability. The findings of the statistical elasticity analysis confirm that several elasticities are jointly coordinated to control stability and that the main source for potential instabilities are mutations in the enzyme alpha-ketoglutarate dehydrogenase. Dorothee Childs, Sergio Grimbs, Joachim Selbig |
Bioinform. | 1 |