Brian Matejek

dblp:172/2144 · DBLP profile ↗
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12ranked-venue papers
4as first author
5since 2021 · last 2025
0000-0002-3517-9229ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Graphics, computer vision, multimedia, augmented reality and games · 9 · 3 first-author · 2 since 2021Artificial intelligence and machine learning · 6 · 1 first-author · 3 since 2021Applied, interdisciplinary, general and emerging computing · 4 · 3 first-author · 2 since 2021Databases, data management, data science and information retrieval · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
4 papers
Probabilistic and Bayesian machine learning · 35% Vision and language · 20% Efficient and distributed learning · 12%
Computer graphics and multimedia
1 paper
Visualization and visual analytics · 100%

Topics — the 17 heaviest of 17, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Efficient and distributed learning › inference efficiency
energy-efficient inference
0.912025
SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding · NeurIPS 2025
Computer vision › Vision and language › video-language understanding
natural language video grounding
0.912025
SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding · NeurIPS 2025
Machine learning › Deep learning architectures and training
spiking neural network
0.912025
SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding · NeurIPS 2025
Computer vision › Vision and language
temporal grounding
0.912025
SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding · NeurIPS 2025
Machine learning › Probabilistic and Bayesian machine learning › statistical inference › density estimation
density ratio estimation
0.812024
Direct Amortized Likelihood Ratio Estimation · AAAI 2024
Machine learning › Probabilistic and Bayesian machine learning › monte carlo methods › markov chain monte carlo
hamiltonian monte carlo
0.812024
Direct Amortized Likelihood Ratio Estimation · AAAI 2024
Machine learning › Probabilistic and Bayesian machine learning › monte carlo methods
markov chain monte carlo
0.812024
Direct Amortized Likelihood Ratio Estimation · AAAI 2024
Machine learning › Probabilistic and Bayesian machine learning › statistical inference › bayesian inference › approximate bayesian inference
simulation-based inference
0.812024
Direct Amortized Likelihood Ratio Estimation · AAAI 2024
Computer vision › Segmentation and scene understanding › biomedical image segmentation
connectomics segmentation
0.412020
Two Stream Active Query Suggestion for Active Learning in Connectomics · ECCV (18) 2020
Computer vision › 3D vision
3d scene understanding
0.412019
Biologically-Constrained Graphs for Global Connectomics Reconstruction · CVPR 2019
Machine learning › Graph learning › graph clustering
graph partitioning
0.412019
Biologically-Constrained Graphs for Global Connectomics Reconstruction · CVPR 2019
Computer vision › Segmentation and scene understanding › image segmentation › region-based segmentation
region merging
0.412019
Biologically-Constrained Graphs for Global Connectomics Reconstruction · CVPR 2019
Visualization and visual analytics
visual analytics
0.412019
Commercial Visual Analytics Systems-Advances in the Big Data Analytics Field · IEEE Trans. Vis. Comput. Graph. 2019
Computer vision › Video understanding and tracking
multimodal video understanding
0.312025
SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding · NeurIPS 2025
Machine learning › Efficient and distributed learning
active learning
0.112020
Two Stream Active Query Suggestion for Active Learning in Connectomics · ECCV (18) 2020
Computer vision › Segmentation and scene understanding
instance segmentation
0.112019
Biologically-Constrained Graphs for Global Connectomics Reconstruction · CVPR 2019
Data mining
big data analytics
0.112019
Commercial Visual Analytics Systems-Advances in the Big Data Analytics Field · IEEE Trans. Vis. Comput. Graph. 2019

Methods — techniques the papers use, named apart from their topics

spiking neural network · 0.9knowledge distillation · 0.9implicit differentiation · 0.9survey · 0.8neural ratio estimation · 0.8monte carlo · 0.8two-stream network · 0.4active learning · 0.4watershed transform · 0.4neural network · 0.4geometric constraints · 0.4
YearPublicationVenuePosition
2025 SpikingVTG: A Spiking Detection Transformer for Video Temporal Grounding
abstract
Video Temporal Grounding (VTG) aims to retrieve precise temporal segments in a video conditioned on natural language queries. Unlike conventional neural frameworks that rely heavily on computationally expensive dense matrix multiplications, Spiking Neural Networks (SNNs)—previously underexplored in this domain—offer a unique opportunity to tackle VTG tasks through bio-plausible spike-based communication and an event-driven accumulation-based computational paradigm. We introduce SpikingVTG, a multi-modal spiking detection transformer, designed to harness the computational simplicity and sparsity of SNNs for VTG tasks. Leveraging the temporal dynamics of SNNs, our model introduces a Saliency Feedback Gating (SFG) mechanism that assigns dynamic saliency scores to video clips and applies multiplicative gating to highlight relevant clips while suppressing less informative ones. SFG enhances performance and reduces computational overhead by minimizing neural activity. We analyze the layer-wise convergence dynamics of SFG-enabled model and apply implicit differentiation at equilibrium to enable efficient, BPTT-free training. To improve generalization and maximize performance, we enable knowledge transfer by optimizing a Cos-L2 representation matching loss that aligns the layer-wise representation and attention maps of a non-spiking teacher with those of our student SpikingVTG. Additionally, we present Normalization-Free (NF)-SpikingVTG, which eliminates non-local operations like softmax and layer normalization, and an extremely quantized 1-bit (NF)-SpikingVTG variant for potential deployment on edge devices. Our models achieve competitive results on QVHighlights, Charades-STA, TACoS, and YouTube Highlights, establishing a strong baseline for multi-modal spiking VTG solutions.
Malyaban Bal, Brian Matejek, Susmit Jha, Adam D. Cobb
NeurIPS2
2024 Direct Amortized Likelihood Ratio Estimation
abstract
We introduce a new amortized likelihood ratio estimator for likelihood-free simulation-based inference (SBI). Our estimator is simple to train and estimates the likelihood ratio using a single forward pass of the neural estimator. Our approach directly computes the likelihood ratio between two competing parameter sets which is different from the previous approach of comparing two neural network output values. We refer to our model as the direct neural ratio estimator (DNRE). As part of introducing the DNRE, we derive a corresponding Monte Carlo estimate of the posterior. We benchmark our new ratio estimator and compare to previous ratio estimators in the literature. We show that our new ratio estimator often outperforms these previous approaches. As a further contribution, we introduce a new derivative estimator for likelihood ratio estimators that enables us to compare likelihood-free Hamiltonian Monte Carlo (HMC) with random-walk Metropolis-Hastings (MH). We show that HMC is equally competitive, which has not been previously shown. Finally, we include a novel real-world application of SBI by using our neural ratio estimator to design a quadcopter. Code is available at https://github.com/SRI-CSL/dnre.
Adam D. Cobb, Brian Matejek, Daniel Elenius, Susmit Jha
AAAI2
2022 Algorithmic Tools for Understanding the Motif Structure of Networks
Brian Matejek, Michael Mitzenmacher, Charalampos E. Tsourakakis
ECML/PKDD (2)2
2022 Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes
abstract
As connectomic datasets exceed hundreds of terabytes in size, accurate and efficient skeleton generation of the label volumes has evolved into a critical component of the computation pipeline used for analysis, evaluation, visualization, and error correction. We propose a novel topological thinning strategy that uses biological-constraints to produce accurate centerlines from segmented neuronal volumes while still maintaining biologically relevant properties. Current methods are either agnostic to the underlying biology, have non-linear running times as a function of the number of input voxels, or both. First, we eliminate from the input segmentation biologically-infeasible bubbles, pockets of voxels incorrectly labeled within a neuron, to improve segmentation accuracy, allow for more accurate centerlines, and increase processing speed. Next, a Convolutional Neural Network (CNN) detects cell bodies from the input segmentation, allowing us to anchor our skeletons to the somata. Lastly, a synapse-aware topological thinning approach produces expressive skeletons for each neuron with a nearly one-to-one correspondence between endpoints and synapses. We simultaneously estimate geometric properties of neurite width and geodesic distance between synapse and cell body, improving accuracy by 47.5% and 62.8% over baseline methods. We separate the skeletonization process into a series of computation steps, leveraging data-parallel strategies to increase throughput significantly. We demonstrate our results on over 1250 neurons and neuron fragments from three different species, processing over one million voxels per second per CPU with linear scalability.
Brian Matejek, Tim Franzmeyer, Donglai Wei 0001, Xueying Wang 0002, Jinglin Zhao, Kálmán Palágyi, Jeff Lichtman, Hanspeter Pfister
IEEE Trans. Medical Imaging1
2021 AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions
Donglai Wei 0001, Kisuk Lee, J. Alexander Bae, Zequan Liu, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang 0002, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
MICCAI (1)13
2020 Two Stream Active Query Suggestion for Active Learning in Connectomics
Zudi Lin, Donglai Wei 0001, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang 0002, Richard Schalek, Daniel R. Berger, Brian Matejek, Lee Kamentsky, Adi Suissa, Daniel Haehn, Thouis R. Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister
ECCV (18)9
2019 Biologically-Constrained Graphs for Global Connectomics Reconstruction
abstract
Most current state-of-the-art connectome reconstruction pipelines have two major steps: initial pixel-based segmentation with affinity prediction and watershed transform, and refined segmentation by merging over-segmented regions. These methods rely only on local context and are typically agnostic to the underlying biology. Since a few merge errors can lead to several incorrectly merged neuronal processes, these algorithms are currently tuned towards over-segmentation producing an overburden of costly proofreading. We propose a third step for connectomics reconstruction pipelines to refine an over-segmentation using both local and global context with an emphasis on adhering to the underlying biology. We first extract a graph from an input segmentation where nodes correspond to segment labels and edges indicate potential split errors in the over-segmentation. In order to increase throughput and allow for large-scale reconstruction, we employ biologically inspired geometric constraints based on neuron morphology to reduce the number of nodes and edges. Next, two neural networks learn these neuronal shapes to further aid the graph construction process. Lastly, we reformulate the region merging problem as a graph partitioning one to leverage global context. We demonstrate the performance of our approach on four real-world connectomics datasets with an average variation of information improvement of 21.3%.
Brian Matejek, Daniel Haehn, Haidong Zhu, Donglai Wei 0001, Toufiq Parag, Hanspeter Pfister
CVPR1
2019 Synapse-Aware Skeleton Generation for Neural Circuits
Brian Matejek, Donglai Wei 0001, Xueying Wang 0002, Jinglin Zhao, Kálmán Palágyi, Hanspeter Pfister
MICCAI (1)1
2019 Commercial Visual Analytics Systems-Advances in the Big Data Analytics Field
abstract
Five years after the first state-of-the-art report on Commercial Visual Analytics Systems we present a reevaluation of the Big Data Analytics field. We build on the success of the 2012 survey, which was influential even beyond the boundaries of the InfoVis and Visual Analytics (VA) community. While the field has matured significantly since the original survey, we find that innovation and research-driven development are increasingly sacrificed to satisfy a wide range of user groups. We evaluate new product versions on established evaluation criteria, such as available features, performance, and usability, to extend on and assure comparability with the previous survey. We also investigate previously unavailable products to paint a more complete picture of the commercial VA landscape. Furthermore, we introduce novel measures, like suitability for specific user groups and the ability to handle complex data types, and undertake a new case study to highlight innovative features. We explore the achievements in the commercial sector in addressing VA challenges and propose novel developments that should be on systems' roadmaps in the coming years.
Michael Behrisch 0001, Dirk Streeb, Florian Stoffel, Daniel Seebacher, Brian Matejek, Stefan Weber 0004, Sebastian Mittelstädt, Hanspeter Pfister, Daniel A. Keim
IEEE Trans. Vis. Comput. Graph.5
2018 Efficient Correction for EM Connectomics with Skeletal Representation
Konstantin Dimitriev, Toufiq Parag, Brian Matejek, Arie E. Kaufman, Hanspeter Pfister
BMVC3
2017 Compresso: Efficient Compression of Segmentation Data for Connectomics
Brian Matejek, Daniel Haehn, Fritz Lekschas, Michael Mitzenmacher, Hanspeter Pfister
MICCAI (1)1
2015 Learning Hierarchical Semantic Segmentations of LIDAR Data
abstract
This paper investigates a method for semantic segmentation of small objects in terrestrial LIDAR scans in urban environments. The core research contribution is a hierarchical segmentation algorithm where potential merges between segments are prioritized by a learned affinity function and constrained to occur only if they achieve a significantly high object classification probability. This approach provides a way to integrate a learned shape-prior (the object classifier) into a search for the best semantic segmentation in a fast and practical algorithm. Experiments with LIDAR scans collected by Google Street View cars throughout ~100 city blocks of New York City show that the algorithm provides better segmentations and classifications than simple alternatives for cars, vans, traffic lights, and street lights.
David Dohan, Brian Matejek, Thomas A. Funkhouser
3DV2