We study a generalization of the problem of reconstructing strings from their substring compositions first proposed by Acharya et al. in 2015. This problem is linked to information retrieval from polymer-based data storage systems where the information is read from polymers with tandem mass (MS/MS) spectrometers. Previously the problem has been studied when the polymers are strings/paths. However, polymers allow different structures, which motivates the more general problem of reconstructing graphs from their connected subgraphs compositions. We present some graph classes for which graphs are reconstructable. In particular, we present an infinite subclass of subdivided stars which are reconstructable, allow storing more information than strings, have a simple reconstruction algorithm and structure. Besides positive results, we also give some graph classes where a large number of non-isomorphic labelings yield the same composition multisets.

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A path cover of a digraph is a collection of paths collectively containing its vertex set. A path cover with minimum cardinality for a directed acyclic graph can be found in polynomial time [Fulkerson, AMS'56; Cáceres et al., SODA'22]. Moreover, Dilworth’s celebrated theorem on chain coverings of partially ordered sets equivalently states that the minimum size of a path cover of a DAG is equal to the maximum size of a set of mutually unreachable vertices. In this paper, we examine how far these classic results can be extended to a dynamic setting. A temporal digraph has an arc set that changes over discrete time-steps; if the underlying digraph is acyclic, then it is a temporal DAG. A temporal path is a directed path in the underlying digraph, such that the time-steps of arcs are strictly increasing along the path. Two temporal paths are temporally disjoint if they do not occupy any vertex at the same time. A temporal path cover is a collection 𝒞 of temporal paths that covers all vertices, and 𝒞 is temporally disjoint if all its temporal paths are pairwise temporally disjoint. We study the computational complexities of the problems of finding a minimum-size temporal (disjoint) path cover (denoted as Temporal Path Cover and Temporally Disjoint Path Cover). On the negative side, we show that both Temporal Path Cover and Temporally Disjoint Path Cover are NP-hard even when the underlying DAG is planar, bipartite, subcubic, and there are only two arc-disjoint time-steps. Moreover, Temporally Disjoint Path Cover remains NP-hard even on temporal oriented trees. We also observe that natural temporal analogues of Dilworth’s theorem on these classes of temporal DAGs do not hold. In contrast, we show that Temporal Path Cover is polynomial-time solvable on temporal oriented trees by a reduction to Clique Cover for (static undirected) weakly chordal graphs (a subclass of perfect graphs for which Clique Cover admits an efficient algorithm). This highlights an interesting algorithmic difference between the two problems. Although it is NP-hard on temporal oriented trees, Temporally Disjoint Path Cover becomes polynomial-time solvable on temporal oriented lines and temporal rooted directed trees. Motivated by the hardness result on trees, we show that, in contrast, Temporal Path Cover admits an XP time algorithm with respect to parameter t_max + tw, where t_max is the maximum time-step and tw is the treewidth of the underlying static undirected graph; moreover, Temporally Disjoint Path Cover admits an FPT algorithm with respect to the same parameterization.

A path is isometric if it is a shortest path between its endpoints. In this article, we consider the graph covering problem Isometric Path Cover, where we want to cover all the vertices of the graph using a minimum-size set of isometric paths. Although this problem has been considered from a structural point of view (in particular, regarding applications to pursuit-evasion games), it is little studied from the algorithmic perspective. We consider Isometric Path Cover on chordal graphs, and show that the problem is NP-hard for this class. On the positive side, for chordal graphs, we design a 4-approximation algorithm and an FPT algorithm for the parameter solution size. The approximation algorithm is based on a reduction to the classic path covering problem on a suitable directed acyclic graph obtained from a breadth first search traversal of the graph. The approximation ratio of our algorithm is 3 for interval graphs and 2 for proper interval graphs. Moreover, we extend the analysis of our approximation algorithm to k-chordal graphs (graphs whose induced cycles have length at most k) by showing that it has an approximation ratio of k+7 for such graphs, and to graphs of treelength at most 𝓁, where the approximation ratio is at most 6𝓁+2.