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Phil Green

dblp:183/4232 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2013
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequence assembly
assembly editing
0.212013
Consed: a graphical editor for next-generation sequencing · Bioinform. 2013
Bioinformatics and computational biology › sequence analysis › sequence assembly
genome assembly
0.212013
Consed: a graphical editor for next-generation sequencing · Bioinform. 2013
Bioinformatics and computational biology › sequence analysis › sequence visualization
high-throughput sequencing data visualization
0.212013
Consed: a graphical editor for next-generation sequencing · Bioinform. 2013
Bioinformatics and computational biology › genomics
variant calling
0.012013
Consed: a graphical editor for next-generation sequencing · Bioinform. 2013

Methods — techniques the papers use, named apart from their topics

BAM file reading · 0.2
YearPublicationVenuePosition
2013 Consed: a graphical editor for next-generation sequencing
abstract
SUMMARY: The rapid growth of DNA sequencing throughput in recent years implies that graphical interfaces for viewing and correcting errors must now handle large numbers of reads, efficiently pinpoint regions of interest and automate as many tasks as possible. We have adapted consed to reflect this. To allow full-feature editing of large datasets while keeping memory requirements low, we developed a viewer, bamScape, that reads billion-read BAM files, identifies and displays problem areas for user review and launches the consed graphical editor on user-selected regions, allowing, in addition to longstanding consed capabilities such as assembly editing, a variety of new features including direct editing of the reference sequence, variant and error detection, display of annotation tracks and the ability to simultaneously process a group of reads. Many batch processing capabilities have been added. AVAILABILITY: The consed package is free to academic, government and non-profit users, and licensed to others for a fee by the University of Washington. The current version (26.0) is available for linux, macosx and solaris systems or as C++ source code. It includes a user's manual (with exercises) and example datasets. http://www.phrap.org/consed/consed.html CONTACT: [email protected] .
David Gordon, Phil Green
Bioinform.2