Shahed K. Mohammed

dblp:183/6810 · DBLP profile ↗
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10ranked-venue papers
3as first author
5since 2021 · last 2023
0000-0003-0045-7660ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 7 · 1 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 1 first-author · 1 since 2021Artificial intelligence and machine learning · 1 · 1 first-authorSystems, architecture and hardware · 1
YearPublicationVenuePosition
2023 Multi-Frequency 3D Shear Wave Absolute Vibro-Elastography (S-WAVE) System for the Prostate
abstract
This article describes a novel system for quantitative and volumetric measurement of tissue elasticity in the prostate using simultaneous multi-frequency tissue excitation. Elasticity is computed by using a local frequency estimator to measure the three-dimensional local wavelengths of steady-state shear waves within the prostate gland. The shear wave is created using a mechanical voice coil shaker which transmits simultaneous multi-frequency vibrations transperineally. Radio frequency data is streamed directly from a BK Medical 8848 transrectal ultrasound transducer to an external computer where tissue displacement due to the excitation is measured using a speckle tracking algorithm. Bandpass sampling is used that eliminates the need for an ultra-fast frame rate to track the tissue motion and allows for accurate reconstruction at a sampling frequency that is below the Nyquist rate. A roll motor with computer control is used to rotate the transducer and obtain 3D data. Two commercially available phantoms were used to validate both the accuracy of the elasticity measurements as well as the functional feasibility of using the system for in vivo prostate imaging. The phantom measurements were compared with 3D Magnetic Resonance Elastography (MRE), where a high correlation of 96% was achieved. In addition, the system has been used in two separate clinical studies as a method for cancer identification. Qualitative and quantitative results of 11 patients from these clinical studies are presented here. Furthermore, an AUC of 0.87±0.12 was achieved for malignant vs. benign classification using a binary support vector machine classifier trained with data from the latest clinical study with leave one patient out cross-validation.
Tajwar Abrar Aleef, Julio Lobo, Ali Baghani, Shahed K. Mohammed, Hani Eskandari, Hamid Moradi, Robert Rohling, Larry Goldenberg, William J. Morris, Seyedeh Sara Mahdavi, Tim Salcudean
IEEE Trans. Medical Imaging4
2022 Learning-Based US-MR Liver Image Registration with Spatial Priors
Qi Zeng 0004, Shahed K. Mohammed, Emily H. T. Pang, Caitlin Schneider, Mohammad Honarvar, Julio Lobo, Changhong Hu, James Jago, Gary C. Ng, Robert Rohling, Tim Salcudean
MICCAI (6)2
2022 Model-Based Quantitative Elasticity Reconstruction Using ADMM
abstract
We introduce two model-based iterative methods to obtain shear modulus images of tissue using magnetic resonance elastography. The first method jointly finds the displacement field that best fits tissue displacement data and the corresponding shear modulus. The displacement satisfies a viscoelastic wave equation constraint, discretized using the finite element method. Sparsifying regularization terms in both shear modulus and displacement are used in the cost function minimized for the best fit. The second method extends the first method for multifrequency tissue displacement data. The formulated problems are bi-convex. Their solution can be obtained iteratively by using the alternating direction method of multipliers. Sparsifying regularizations and the wave equation constraint filter out sensor noise and compressional waves. Our methods do not require bandpass filtering as a preprocessing step and converge fast irrespective of the initialization. We evaluate our new methods in multiple in silico and phantom experiments, with comparisons with existing methods, and we show improvements in contrast to noise and signal-to-noise ratios. Results from an in vivo liver imaging study show elastograms with mean elasticity comparable to other values reported in the literature.
Shahed K. Mohammed, Mohammad Honarvar, Qi Zeng 0004, Hoda S. Hashemi, Robert Rohling, Piotr Kozlowski, Tim Salcudean
IEEE Trans. Medical Imaging1
2021 A multiparametric volumetric quantitative ultrasound imaging technique for soft tissue characterization
abstract
Quantitative ultrasound (QUS) offers a non-invasive and objective way to quantify tissue health. We recently presented a spatially adaptive regularization method for reconstruction of a single QUS parameter, limited to a two dimensional region. That proof-of-concept study showed that regularization using homogeneity prior improves the fundamental precision-resolution trade-off in QUS estimation. Based on the weighted regularization scheme, we now present a multiparametric 3D weighted QUS (3D QUS) method, involving the reconstruction of three QUS parameters: attenuation coefficient estimate (ACE), integrated backscatter coefficient (IBC) and effective scatterer diameter (ESD). With the phantom studies, we demonstrate that our proposed method accurately reconstructs QUS parameters, resulting in high reconstruction contrast and therefore improved diagnostic utility. Additionally, the proposed method offers the ability to analyze the spatial distribution of QUS parameters in 3D, which allows for superior tissue characterization. We apply a three-dimensional total variation regularization method for the volumetric QUS reconstruction. The 3D regularization involving N planes results in a high QUS estimation precision, with an improvement of standard deviation over the theoretical 1/N rate achievable by compounding N independent realizations. In the in vivo liver study, we demonstrate the advantage of adopting a multiparametric approach over the single parametric counterpart, where a simple quadratic discriminant classifier using feature combination of three QUS parameters was able to attain a perfect classification performance to distinguish between normal and fatty liver cases.
Farah Deeba, Caitlin Schneider, Shahed K. Mohammed, Mohammad Honarvar, Julio Lobo, Edward Tam, Tim Salcudean, Robert Rohling
Medical Image Anal.3
2021 Three-Dimensional Multi-Frequency Shear Wave Absolute Vibro-Elastography (3D S-WAVE) With a Matrix Array Transducer: Implementation and Preliminary In Vivo Study of the Liver
abstract
Magnetic resonance elastography (MRE) is commonly regarded as the imaging-based gold-standard for liver fibrosis staging, comparable to biopsy. While ultrasound-based elastography methods for liver fibrosis staging have been developed, they are confined to a 1D or a 2D region of interest and to a limited depth. 3D Shear Wave Absolute Vibro-Elastography (S-WAVE) is a steady-state, external excitation, volumetric elastography technique that is similar to MRE, but has the additional advantage of multi-frequency excitation. We present a novel ultrasound matrix array implementation of S-WAVE that takes advantage of 3D imaging. We use a matrix array transducer to sample axial multi-frequency steady-state tissue motion over a volume, using a Color Power Angiography sequence. Tissue motion with the frequency components (40, 50,60) and (45, 55, 65) Hz are acquired over a (90° lateral)×(40° elevational)×(16 cm depth) sector with an acquisition time of 12 seconds. We compute the elasticity map in 3D using local spatial frequency estimation. We characterize this new approach in tissue phantoms against measurements obtained with transient-elastography and MRE. Six healthy volunteers and eight patients with chronic liver disease were imaged. Their MRE and S-WAVE volumes were aligned using T1 to B-mode registration for direct comparison in common regions of interest. S-WAVE and MRE results are correlated with R2= 0.92, while MRE and TE results are correlated with R2= 0.71. Our findings show that S-WAVE with matrix array has the potential to deliver a similar assessment of liver fibrosis as MRE in a more accessible, inexpensive way, to a broader set of patients.
Qi Zeng 0004, Mohammad Honarvar, Caitlin Schneider, Shahed K. Mohammed, Julio Lobo, Emily H. T. Pang, Kirby T. Lau, Changhong Hu, James Jago, Siegfried R. Erb, Robert Rohling, Tim Salcudean
IEEE Trans. Medical Imaging4
2019 SWTV-ACE: Spatially Weighted Regularization Based Attenuation Coefficient Estimation Method for Hepatic Steatosis Detection
Farah Deeba, Caitlin Schneider, Shahed K. Mohammed, Mohammad Honarvar, Edward Tam, Tim Salcudean, Robert Rohling
MICCAI (5)3
2019 Liver Segmentation in Magnetic Resonance Imaging via Mean Shape Fitting with Fully Convolutional Neural Networks
Qi Zeng 0004, Davood Karimi, Emily H. T. Pang, Shahed K. Mohammed, Caitlin Schneider, Mohammad Honarvar, Tim Salcudean
MICCAI (2)4
2018 Lossless and reversible colour space transformation for Bayer colour filter array images
abstract
We present two variants of a colour space transformation algorithm to encode Bayer colour filter array images that are based on integer coefficients; as a result, the algorithms are fully lossless and reversible in nature. These transformation algorithms are derived using an optimisation model that reduces the spectral redundancy of Bayer colour components, which results in lower prediction error variance and inter‐colour correlation. These methods, known as optimum reversible colour space transform (ORCT‐1 and ORCT‐2), improve the lossless bitrate of low complexity prediction model without using high complexity interpolation and inter‐colour prediction scheme. Extensive experimentation is performed using five sets of test images for different lossless compression algorithms: JPEG‐LS, JPEG‐2000 and JPEG‐XR. Experimental results show that, in all cases, the proposed schemes perform competitively with other methods with lower computational complexity, which makes them suitable for low‐cost imaging applications.
Shahed K. Mohammed, Khan A. Wahid
IET Image Process.1
2017 A color frame reproduction technique for IoT-based video surveillance application
abstract
In this paper, we present an IoT-based power-efficient color frame transmission and generation algorithm for video surveillance application. The conventional way is to transmit all R, G and B components of all frames. Using our proposed technique, instead of sending all components, first one color frame is sent followed by a series of gray-scale frames. After a certain number of gray-scale frames, another color frame is sent followed by the same number of gray-scale frames. This process is repeated for video surveillance system. In the decoder, color information is formulated from the color frame and then used to colorize the gray-scale frames. Our experimental results show that the IoT-based approach gives better results than traditional techniques in terms of both energy efficiency and quality of the video, and therefore, can enable sensor nodes in IoT to perform more operations with energy constraints.
Rashedul Hasan, Shahed K. Mohammed, Alimul Haque Khan, Khan A. Wahid
ISCAS2
2016 Application of modified ant colony optimization for computer aided bleeding detection system
abstract
Wireless capsule endoscopy (WCE) plays a significant role in the non-invasive small intestine screening for obscure gastrointestinal bleeding detection. However, the task of reviewing 60,000 frames to detect the bleeding encumbers the clinician, leading to visual fatigue and false diagnosis. In this paper, we propose a color feature based bleeding detection system with feature selection using a modified ant colony optimization (MACO) algorithm. We have utilized the feature selection capability of MACO algorithm to find the optimum feature subset over the color space of RGB and HSV, which provided a classifier that outperforms the classifier formed from RGB and HSV features individually. Comprehensive experimental results reveal that the proposed MACO algorithm can detect the optimal feature subset with performance comparable to exhaustive search in case of individual classifier from RGB and HSV requiring 2% of the computational time compared to exhaustive search. The comparative study of feature selection showed that MACO can provide the most relevant features and improve the performance in terms of accuracy, sensitivity and computational time.
Shahed K. Mohammed, Farah Deeba, Francis Minhthang Bui, Khan A. Wahid
IJCNN1