Daniel O'Malley

dblp:191/0561 · also Dan O'Malley · DBLP profile ↗
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7ranked-venue papers
1as first author
7since 2021 · last 2025
0000-0003-0432-3088ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 1 first-author · 3 since 2021Theory of computation · 2 · 2 since 2021Databases, data management, data science and information retrieval · 1 · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 since 2021
YearPublicationVenuePosition
2025 Lost in OCR Translation? Vision-Based Approaches to Robust Document Retrieval
abstract
Retrieval-Augmented Generation (RAG) has become a popular technique for enhancing the reliability and utility of Large Language Models (LLMs) by grounding responses in external documents. Traditional RAG systems rely on Optical Character Recognition (OCR) to first process scanned documents into text. However, even state-of-the-art OCRs can introduce errors, especially in degraded or complex documents. Recent vision-language approaches, such as ColPali, propose direct visual embedding of documents, eliminating the need for OCR. This study presents a systematic comparison between a vision-based RAG system (ColPali) and more traditional OCR-based pipelines utilizing Llama 3.2 (90B) and Nougat OCR across varying document qualities. Beyond conventional retrieval accuracy metrics, we introduce a semantic answer evaluation benchmark to assess end-to-end question-answering performance. Our findings indicate that while vision-based RAG performs well on documents it has been fine-tuned on, OCR-based RAG is better able to generalize to unseen documents of varying quality. We highlight the key trade-offs between computational efficiency and semantic accuracy, offering practical guidance for RAG practitioners in selecting between OCR-dependent and vision-based document retrieval systems in production environments.
Alexander Most, Joseph Winjum, Manish Bhattarai, Shawn M. Jones, Nishath Rajiv Ranasinghe, Ayan Biswas 0002, Daniel O'Malley
DocEng7
2025 Model-Agnostic Knowledge Guided Correction for Improved Neural Surrogate Rollout
abstract
Modeling the evolution of physical systems is critical to many applications in science and engineering. As the evolution of these systems is governed by partial differential equations (PDEs), there are a number of computational simulations which resolve these systems with high accuracy. However, as these simulations incur high computational costs, they are infeasible to be employed for large-scale analysis. A popular alternative to simulators are neural network surrogates which are trained in a data-driven manner and are much more computationally efficient. However, these surrogate models suffer from high rollout error when used autoregressively, especially when confronted with training data paucity. Existing work proposes to improve surrogate rollout error by either including physical loss terms directly in the optimization of the model or incorporating computational simulators as `differentiable layers' in the neural network. Both of these approaches have their challenges, with physical loss functions suffering from slow convergence for stiff PDEs and simulator layers requiring gradients which are not always available, especially in legacy simulators. We propose the Hybrid PDE Predictor with Reinforcement Learning (HyPER) model: a model-agnostic, RL based, cost-aware model which combines a neural surrogate, RL decision model, and a physics simulator (with or without gradients) to reduce surrogate rollout error significantly. In addition to reducing in-distribution rollout error by **47%-78%**, HyPER learns an intelligent policy that is adaptable to changing physical conditions and resistant to noise corruption. Code available at https://github.com/scailab/HyPER.
Bharat Srikishan, Daniel O'Malley, Mohamed Mehana, Nicholas Lubbers, Nikhil Muralidhar
ICLR2
2025 Benchmarking Large Language Models with Integer Sequence Generation Tasks
abstract
We present a novel benchmark designed to rigorously evaluate the capabilities of large language models (LLMs) in mathematical reasoning and algorithmic code synthesis tasks. The benchmark comprises integer sequence generation tasks sourced from the Online Encyclopedia of Integer Sequences (OEIS), testing LLMs' abilities to accurately and efficiently generate Python code to compute these sequences without using lookup tables. Our comprehensive evaluation includes leading models from OpenAI (including the specialized reasoning-focused o-series), Anthropic, Meta, and Google across a carefully selected set of 1000 OEIS sequences categorized as easy'' orhard.'' Half of these sequences are classical sequences from the early days of OEIS and half were recently added to avoid contamination with the models' training data. To prevent models from exploiting memorized sequence values, we introduce an automated cheating detection mechanism that flags usage of lookup tables, validated by comparison with human expert evaluations. Experimental results demonstrate that reasoning-specialized models (o3, o3-mini, o4-mini from OpenAI, and Gemini 2.5-pro from Google) achieve substantial improvements in accuracy over non-reasoning models, especially on more complex tasks. However, overall model performance on the hard sequences is poor, highlighting persistent challenges in algorithmic reasoning. Our benchmark provides important insights into the strengths and limitations of state-of-the-art LLMs, particularly emphasizing the necessity for further advancements to reliably solve complex mathematical reasoning tasks algorithmically.
Daniel O'Malley, Manish Bhattarai, Nishath Rajiv Ranasinghe, Erick Draayer, Javier E. Santos
NeurIPS1
2025 PatchFinder: Leveraging Visual Language Models for Accurate Information Retrieval Using Model Uncertainty
abstract
For decades, corporations and governments have re-lied on scanned documents to record vast amounts of information. However, extracting this information is a slow and tedious process due to the sheer volume and complexity of these records. The rise of Vision Language Models (VLMs) presents a way to efficiently and accurately extract the information out of these documents. The current au-tomated workflow often requires a two-step approach in-volving the extraction of information using optical char-acter recognition software, and subsequent usage of large language models for processing this information. Unfor-tunately, these methods encounter significant challenges when dealing with noisy scanned documents, often requiring computationally expensive language models to handle high information density effectively. In this study, we propose PatchFinder, an algorithm that builds upon VLMs to improve information extraction. First, we devise a confidence-based score, called Patch Confi-dence, based on the Maximum Softmax Probability of the VLMs' output to measure the model's confidence in its predictions. Using this metric, PatchFinder determines a suitable patch size, partitions the input document into overlapping patches, and generates confidence-based predictions for the target information. Our experimental results show that PatchFinder, leveraging Phi-3v, a 4.2 billion parameter VLM, achieves an accuracy of 94% on our dataset of 190 noisy scanned documents, outperforming ChatGPT-4o by 18.5 percentage points.
Roman Colman, Minh Nhat Vu, Manish Bhattarai, Martin Ma, Hari S. Viswanathan, Daniel O'Malley, Javier E. Santos
WACV6
2022 Fair Sampling Error Analysis on NISQ Devices
abstract
We study the status of fair sampling on Noisy Intermediate Scale Quantum (NISQ) devices, in particular the IBM Q family of backends. Using the recently introduced Grover Mixer-QAOA algorithm for discrete optimization, we generate fair sampling circuits to solve six problems of varying difficulty, each with several optimal solutions, which we then run on twenty backends across the IBM Q system. For a given circuit evaluated on a specific set of qubits, we evaluate: how frequently the qubits return an optimal solution to the problem, the fairness with which the qubits sample from all optimal solutions, and the reported hardware error rate of the qubits. To quantify fairness, we define a novel metric based on Pearson’s χ 2 test. We find that fairness is relatively high for circuits with small and large error rates, but drops for circuits with medium error rates. This indicates that structured errors dominate in this regime, while unstructured errors, which are random and thus inherently fair, dominate in noisier qubits and longer circuits. Our results show that fairness can be a powerful tool for understanding the intricate web of errors affecting current NISQ hardware.
John Golden 0001, Andreas Bärtschi, Daniel O'Malley, Stephan J. Eidenbenz
ACM Trans. Quantum Comput.3
2022 Quantum Algorithm Implementations for Beginners
abstract
As quantum computers become available to the general public, the need has arisen to train a cohort of quantum programmers, many of whom have been developing classical computer programs for most of their careers. While currently available quantum computers have less than 100 qubits, quantum computing hardware is widely expected to grow in terms of qubit count, quality, and connectivity. This review aims at explaining the principles of quantum programming, which are quite different from classical programming, with straightforward algebra that makes understanding of the underlying fascinating quantum mechanical principles optional. We give an introduction to quantum computing algorithms and their implementation on real quantum hardware. We survey 20 different quantum algorithms, attempting to describe each in a succinct and self-contained fashion. We show how these algorithms can be implemented on IBM’s quantum computer, and in each case, we discuss the results of the implementation with respect to differences between the simulator and the actual hardware runs. This article introduces computer scientists, physicists, and engineers to quantum algorithms and provides a blueprint for their implementations.
Abhijith Jayakumar, Adetokunbo Adedoyin, John Ambrosiano, Petr M. Anisimov, William Casper, Gopinath Chennupati, Carleton Coffrin, Hristo N. Djidjev, David Gunter, Satish Karra, Nathan Lemons, Shizeng Lin, Alexander Malyzhenkov, David Mascarenas, Susan M. Mniszewski, Balasubramanya T. Nadiga, Daniel O'Malley, Diane Oyen, Scott Pakin, Lakshman Prasad, Randy Roberts, Phillip Romero, Nandakishore Santhi, Nikolai Sinitsyn, Pieter J. Swart, Jim Wendelberger, Boram Yoon, Richard J. Zamora, Wei Zhu 0011, Stephan J. Eidenbenz, Andreas Bärtschi, Patrick J. Coles, Marc Vuffray, Andrey Y. Lokhov
ACM Trans. Quantum Comput.17
2021 On the feasibility of using physics-informed machine learning for underground reservoir pressure management
Dylan Robert Harp, Daniel O'Malley, Bicheng Yan, Rajesh J. Pawar
Expert Syst. Appl.2