Identifiability is a desirable property of a statistical model: it implies that the true model parameters may be estimated to any desired precision, given sufficient computational resources and data. We study identifiability in the context of representation learning: discovering nonlinear data representations that are optimal with respect to some downstream task. When parameterized as deep neural networks, such representation functions lack identifiability in parameter space, because they are over-parameterized by design. In this paper, building on recent advances in nonlinear Independent Components Analysis, we aim to rehabilitate identifiability by showing that a large family of discriminative models are in fact identifiable in function space, up to a linear indeterminacy. Many models for representation learning in a wide variety of domains have been identifiable in this sense, including text, images and audio, state-of-the-art at time of publication. We derive sufficient conditions for linear identifiability and provide empirical support for the result on both simulated and real-world data.

Meta-materials are an important emerging class of engineered materials in which complex macroscopic behaviour--whether electromagnetic, thermal, or mechanical--arises from modular substructure. Simulation and optimization of these materials are computationally challenging, as rich substructures necessitate high-fidelity finite element meshes to solve the governing PDEs. To address this, we leverage parametric modular structure to learn component-level surrogates, enabling cheaper high-fidelity simulation. We use a neural network to model the stored potential energy in a component given boundary conditions. This yields a structured prediction task: macroscopic behavior is determined by the minimizer of the system's total potential energy, which can be approximated by composing these surrogate models. Composable energy surrogates thus permit simulation in the reduced basis of component boundaries. Costly ground-truth simulation of the full structure is avoided, as training data are generated by performing finite element analysis of individual components. Using dataset aggregation to choose training data allows us to learn energy surrogates which produce accurate macroscopic behavior when composed, accelerating simulation of parametric meta-materials.

We introduce a flexible, scalable Bayesian inference framework for nonlinear dynamical systems characterised by distinct and hierarchical variability at the individual, group, and population levels. Our model class is a generalisation of nonlinear mixed-effects (NLME) dynamical systems, the statistical workhorse for many experimental sciences. We cast parameter inference as stochastic optimisation of an end-to-end differentiable, block-conditional variational autoencoder. We specify the dynamics of the data-generating process as an ordinary differential equation (ODE) such that both the ODE and its solver are fully differentiable. This model class is highly flexible: the ODE right-hand sides can be a mixture of user-prescribed or "white-box" sub-components and neural network or "black-box" sub-components. Using stochastic optimisation, our amortised inference algorithm could seamlessly scale up to massive data collection pipelines (common in labs with robotic automation). Finally, our framework supports interpretability with respect to the underlying dynamics, as well as predictive generalization to unseen combinations of group components (also called “zero-shot" learning). We empirically validate our method by predicting the dynamic behaviour of bacteria that were genetically engineered to function as biosensors.

We propose a simple and general variant of the standard reparameterized gradient estimator for the variational evidence lower bound. Specifically, we remove a part of the total derivative with respect to the variational parameters that corresponds to the score function. Removing this term produces an unbiased gradient estimator whose variance approaches zero as the approximate posterior approaches the exact posterior. We analyze the behavior of this gradient estimator theoretically and empirically, and generalize it to more complex variational distributions such as mixtures and importance-weighted posteriors.