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John R. Kitchin

dblp:199/6691 · DBLP profile ↗
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3ranked-venue papers
0as first author
3since 2021 · last 2025
0000-0003-2625-9232ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 3 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
3 papers
Representation and self-supervised learning · 55% Graph learning · 27% Deep learning architectures and training · 10%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Computational science and engineering · 90% Bioinformatics and computational biology · 10%

Topics — the 9 heaviest of 10, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Computational science and engineering › model simulation
atomistic simulation
0.912025
UMA: A Family of Universal Models for Atoms · NeurIPS 2025
Computational science and engineering › model simulation › atomistic simulation
machine learning interatomic potential
0.912025
UMA: A Family of Universal Models for Atoms · NeurIPS 2025
Machine learning › Graph learning › molecular representation learning › molecular graph learning
molecular property prediction
0.812024
From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction · ICLR 2024
Machine learning › Representation and self-supervised learning › pre-training
multi-domain pre-training
0.812024
From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction · ICLR 2024
Machine learning › Representation and self-supervised learning
pre-training
0.812024
From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction · ICLR 2024
Computational science and engineering
computational chemistry
0.812024
AdsorbDiff: Adsorbate Placement via Conditional Denoising Diffusion · ICML 2024
Machine learning › Deep learning architectures and training
mixture of experts
0.312025
UMA: A Family of Universal Models for Atoms · NeurIPS 2025
Bioinformatics and computational biology
molecular property prediction
0.312025
UMA: A Family of Universal Models for Atoms · NeurIPS 2025
Machine learning › Generative modeling
diffusion model
0.212024
AdsorbDiff: Adsorbate Placement via Conditional Denoising Diffusion · ICML 2024

Methods — techniques the papers use, named apart from their topics

scaling laws · 1.7machine learning force field · 1.5density functional theory · 1.5denoising diffusion · 1.5supervised pretraining · 0.8multi-task learning · 0.8fine-tuning · 0.8
YearPublicationVenuePosition
2025 UMA: A Family of Universal Models for Atoms
abstract
The ability to quickly and accurately compute properties from atomic simulations is critical for advancing a large number of applications in chemistry and materials science including drug discovery, energy storage, and semiconductor manufacturing. To address this need, we present a family of Universal Models for Atoms (UMA), designed to push the frontier of speed, accuracy, and generalization. UMA models are trained on half a billion unique 3D atomic structures (the largest training runs to date) by compiling data across multiple chemical domains, e.g. molecules, materials, and catalysts. We develop empirical scaling laws to help understand how to increase model capacity alongside dataset size to achieve the best accuracy. The UMA small and medium models utilize a novel architectural design we refer to as mixture of linear experts that enables increasing model capacity without sacrificing speed. For example, UMA-medium has 1.4B parameters but only $\sim$50M active parameters per atomic structure. We evaluate UMA models on a diverse set of applications across multiple domains and find that, remarkably, a single model without any fine-tuning can perform similarly or better than specialized models. We are releasing the UMA code, weights, and associated data to accelerate computational workflows and enable the community to build increasingly capable AI models.
Brandon M. Wood, Misko Dzamba, Xiang Fu 0005, Muhammed Shuaibi, Luis Barroso-Luque, Kareem Abdelmaqsoud, Vahe Gharakhanyan, John R. Kitchin, Daniel S. Levine 0003, Kyle Michel, Anuroop Sriram, Taco Cohen, Abhishek Das 0002, Sushree Jagriti Sahoo, Ammar Rizvi, Zachary W. Ulissi, C. Lawrence Zitnick
NeurIPS9
2024 From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction
abstract
Foundation models have been transformational in machine learning fields such as natural language processing and computer vision. Similar success in atomic property prediction has been limited due to the challenges of training effective models across multiple chemical domains. To address this, we introduce Joint Multi-domain Pre-training (JMP), a supervised pre-training strategy that simultaneously trains on multiple datasets from different chemical domains, treating each dataset as a unique pre-training task within a multi-task framework. Our combined training dataset consists of $\sim$120M systems from OC20, OC22, ANI-1x, and Transition-1x. We evaluate performance and generalization by fine-tuning over a diverse set of downstream tasks and datasets including: QM9, rMD17, MatBench, QMOF, SPICE, and MD22. JMP demonstrates an average improvement of 59% over training from scratch and matches or sets state-of-the-art on 34 out of 40 tasks. Our work highlights the potential of pre-training strategies that utilize diverse data to advance property prediction across chemical domains, especially for low-data tasks.
Nima Shoghi, Adeesh Kolluru, John R. Kitchin, Zachary W. Ulissi, C. Lawrence Zitnick, Brandon M. Wood
ICLR3
2024 AdsorbDiff: Adsorbate Placement via Conditional Denoising Diffusion
abstract
Determining the optimal configuration of adsorbates on a slab (adslab) is pivotal in the exploration of novel catalysts across diverse applications. Traditionally, the quest for the lowest energy adslab configuration involves placing the adsorbate onto the slab followed by an optimization process. Prior methodologies have relied on heuristics, problem-specific intuitions, or brute-force approaches to guide adsorbate placement. In this work, we propose a novel framework for adsorbate placement using denoising diffusion. The model is designed to predict the optimal adsorbate site and orientation corresponding to the lowest energy configuration. Further, we have an end-to-end evaluation framework where diffusion-predicted adslab configuration is optimized with a pretrained machine learning force field and finally evaluated with Density Functional Theory (DFT). Our findings demonstrate an acceleration of up to 5x or 3.5x improvement in accuracy compared to the previous best approach. Given the novelty of this framework and application, we provide insights into the impact of pretraining, model architectures, and conduct extensive experiments to underscore the significance of this approach.
Adeesh Kolluru, John R. Kitchin
ICML2