VLDB 2026 Research / reviewers in the wild / expert
Arun Ganesh
dblp:201/4732
· DBLP profile ↗
23ranked-venue papers
12as first author
18since 2021 · last 2025
0000-0001-6057-7619ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Artificial intelligence and machine learning · 13 · 5 first-author · 12 since 2021Theory of computation · 8 · 6 first-author · 5 since 2021Security and privacy · 1 · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Near-Optimal Rates for O(1)-Smooth DP-SCO with a Single Epoch and Large BatchesabstractIn this paper we revisit the DP stochastic convex optimization (SCO) problem. For convex smooth losses, it is well-known that the canonical DP-SGD (stochastic gradient descent) achieves the optimal rate of $O\left(\frac{LR}{\sqrt{n}} + \frac{LR \sqrt{p \log(1/\delta)}}{\epsilon n}\right)$ under $(\epsilon, \delta)$-DP (Bassily et al. 2014), and also well-known that variants of DP-SGD can achieve the optimal rate in a single epoch (Feldman et al. 2019). However, the batch gradient complexity (i.e., number of adaptive optimization steps), which is important in applications like federated learning, is less well-understood. In particular, all prior work on DP-SCO requires $\Omega(n)$ batch gradient steps, multiple epochs, or convexity for privacy. We propose an algorithm, Accelerated-DP-SRGD (stochastic recursive gradient descent), which bypasses the limitations of past work: it achieves the optimal rate for DP-SCO (up to polylog factors), in a single epoch using $\sqrt{n}$ batch gradient steps with batch size $\sqrt{n}$, and can be made private for arbitrary (non-convex) losses via clipping. If the global minimizer is in the constraint set, we can further improve this to $n^{1/4}$ batch gradient steps with batch size $n^{3/4}$. To achieve this, our algorithm combines three key ingredients, a variant of stochastic recursive gradients (SRG), accelerated gradient descent, and correlated noise generation from DP continual counting. Christopher A. Choquette-Choo, Arun Ganesh, Abhradeep Thakurta |
ALT | 2 |
| 2025 | Near-Exact Privacy Amplification for Matrix MechanismsabstractWe study the problem of computing the privacy parameters for DP machine learning when using privacy amplification via random batching and noise correlated across rounds via a correlation matrix $\textbf{C}$ (i.e., the matrix mechanism). Past work on this problem either only applied to banded $\textbf{C}$, or gave loose privacy parameters. In this work, we give a framework for computing near-exact privacy parameters for any lower-triangular, non-negative $\textbf{C}$. Our framework allows us to optimize the correlation matrix $\textbf{C}$ while accounting for amplification, whereas past work could not. Empirically, we show this lets us achieve smaller RMSE on prefix sums than the previous state-of-the-art (SOTA). We also show that we can improve on the SOTA performance on deep learning tasks. Our two main technical tools are (i) using Monte Carlo accounting to bypass composition, which was the main technical challenge for past work, and (ii) a ``balls-in-bins'' batching scheme that enables easy privacy analysis and is closer to practical random batching than Poisson sampling. Christopher A. Choquette-Choo, Arun Ganesh, Saminul Haque, Thomas Steinke 0002, Abhradeep Thakurta |
ICLR | 2 |
| 2025 | The Last Iterate Advantage: Empirical Auditing and Principled Heuristic Analysis of Differentially Private SGDabstractWe propose a simple heuristic privacy analysis of noisy clipped stochastic gradient descent (DP-SGD) in the setting where only the last iterate is released and the intermediate iterates remain hidden. Namely, our heuristic assumes a linear structure for the model.
We show experimentally that our heuristic is predictive of the outcome of privacy auditing applied to various training procedures. Thus it can be used prior to training as a rough estimate of the final privacy leakage. We also probe the limitations of our heuristic by providing some artificial counterexamples where it underestimates the privacy leakage.
The standard composition-based privacy analysis of DP-SGD effectively assumes that the adversary has access to all intermediate iterates, which is often unrealistic. However, this analysis remains the state of the art in practice. While our heuristic does not replace a rigorous privacy analysis, it illustrates the large gap between the best theoretical upper bounds and the privacy auditing lower bounds and sets a target for further work to improve the theoretical privacy analyses. Milad Nasr, Thomas Steinke 0002, Borja Balle, Christopher A. Choquette-Choo, Arun Ganesh, Matthew Jagielski, Jamie Hayes, Abhradeep Thakurta, Adam D. Smith 0001, Andreas Terzis |
ICLR | 5 |
| 2025 | It's My Data Too: Private ML for Datasets with Multi-User Training ExamplesabstractWe initiate a study of algorithms for model training with user-level differential privacy (DP), where each example may be attributed to multiple users, which we call the multi-attribution model. We first provide a carefully chosen definition of user-level DP under the multi-attribution model. Training in the multi-attribution model is facilitated by solving the contribution bounding problem, i.e. the problem of selecting a subset of the dataset for which each user is associated with a limited number of examples. We propose a greedy baseline algorithm for the contribution bounding problem. We then empirically study this algorithm for a synthetic logistic regression task and a transformer training task, including studying variants of this baseline algorithm that optimize the subset chosen using different techniques and criteria. We find that the baseline algorithm remains competitive with its variants in most settings, and build a better understanding of the practical importance of a bias-variance tradeoff inherent in solutions to the contribution bounding problem. Arun Ganesh, Ryan McKenna, H. Brendan McMahan, Adam D. Smith 0001 |
ICML | 1 |
| 2025 | Recycling Scraps: Improving Private Learning by Leveraging Checkpoints]{Recycling Scraps: Improving Private Learning by Leveraging CheckpointsabstractDP training pipelines for modern neural networks are iterative and generate multiple checkpoints. However, all except the final checkpoint are discarded after training. In this work, we propose novel methods to utilize intermediate checkpoints to improve prediction accuracy and estimate uncertainty in DP predictions. First, we design a general framework that uses aggregates of intermediate checkpoints during training to increase the accuracy of DP ML techniques. Specifically, we demonstrate that training over aggregates can provide significant gains in prediction accuracy over the existing state-of-the-art for StackOverflow, CIFAR10 and CIFAR100 datasets. For instance, we improve the state-of-the-art DP StackOverflow accuracies to 22.74% (+2.06% relative) for epsilon=8.2, and 23.90% (+2.09%) for epsilon=18.9. Furthermore, these gains magnify in settings with periodically varying training data distributions. We also demonstrate that our methods achieve relative improvements of 0.54% and 62.6% in terms of utility and variance, on a proprietary, production-grade pCVR task. Lastly, we initiate an exploration into estimating the uncertainty (variance) that DP noise adds in the predictions of DP ML models. We prove that, under standard assumptions on the loss function, the sample variance from last few checkpoints provides a good approximation of the variance of the final model of a DP run. Empirically, we show that the last few checkpoints can provide a reasonable lower bound for the variance of a converged DP model. Crucially, all the methods proposed in this paper operate on a single training run of the DP ML technique, thus incurring no additional privacy cost. Virat Shejwalkar, Arun Ganesh, Rajiv Mathews, Yarong Mu, Shuang Song 0001, Om Thakkar 0001, Abhradeep Thakurta |
Proc. Priv. Enhancing Technol. | 2 |
| 2024 | Correlated Noise Provably Beats Independent Noise for Differentially Private LearningabstractDifferentially private learning algorithms inject noise into the learning process. While the most common private learning algorithm, DP-SGD, adds independent Gaussian noise in each iteration, recent work on matrix factorization mechanisms has shown empirically that introducing correlations in the noise can greatly improve their utility. We characterize the asymptotic learning utility for any choice of the correlation function, giving precise analytical bounds for linear regression and as the solution to a convex program for general convex functions. We show, using these bounds, how correlated noise provably improves upon vanilla DP-SGD as a function of problem parameters such as the effective dimension and condition number. Moreover, our analytical expression for the near-optimal correlation function circumvents the cubic complexity of the semi-definite program used to optimize the noise correlation matrix in previous work. We validate these theoretical results with experiments on private deep learning. Our work matches or outperforms prior work while being efficient both in terms of computation and memory. Christopher A. Choquette-Choo, Krishnamurthy Dvijotham, Krishna Pillutla, Arun Ganesh, Thomas Steinke 0002, Abhradeep Thakurta |
ICLR | 4 |
| 2024 | Privacy Amplification for Matrix MechanismsabstractPrivacy amplification exploits randomness in data selection to provide tighter differential privacy (DP) guarantees. This analysis is key to DP-SGD's success in machine learning (ML), but, is not readily applicable to the newer state-of-the-art (SOTA) algorithms. This is because these algorithms, known as DP-FTRL, use the matrix mechanism to add correlated noise instead of independent noise as in DP-SGD.
In this paper, we propose "MMCC'' (matrix mechanism conditional composition), the first algorithm to analyze privacy amplification via sampling for any generic matrix mechanism. MMCC is nearly tight in that it approaches a lower bound as $\epsilon\to0$.
To analyze correlated outputs in MMCC, we prove that they can be analyzed as if they were independent, by conditioning them on prior outputs. Our "conditional composition theorem'' has broad utility: we use it to show that the noise added to binary-tree-DP-FTRL can asymptotically match the noise added to DP-SGD with amplification. Our algorithm also has practical empirical utility. We show that amplification leads to significant improvement in the privacy/utility trade-offs for DP-FTRL style algorithms for standard benchmark tasks. Christopher A. Choquette-Choo, Arun Ganesh, Thomas Steinke 0002, Abhradeep Thakurta |
ICLR | 2 |
| 2023 | Universality of Langevin Diffusion for Private Optimization, with Applications to Sampling from Rashomon SetsabstractIn this paper we provide an algorithmic framework based on Langevin diffusion (LD) and its corresponding discretizations that allow us to simultaneously obtain: i) An algorithm for sampling from the exponential mechanism, whose privacy analysis does not depend on convexity, and which can be stopped at anytime without compromising privacy, and ii) tight uniform stability guarantees for the exponential mechanism. As a direct consequence, we obtain optimal excess empirical and population risk guarantees for (strongly) convex losses under both pure and approximate differential privacy (DP). The framework allows us to design a DP uniform sampler from a Rashomon set. Rashomon sets are widely used in interpretable and robust machine learning, understanding variable importance, and characterizing fairness. Arun Ganesh, Abhradeep Thakurta, Jalaj Upadhyay |
COLT | 1 |
| 2023 | Why Is Public Pretraining Necessary for Private Model Training?abstractIn the privacy-utility tradeoff of a model trained on benchmark language and vision tasks, remarkable improvements have been widely reported when the model is pretrained on public data. Some gain is expected as these models inherit the benefits of transfer learning, which is the standard motivation in non-private settings. However, the stark contrast in the gain of pretraining between non-private and private machine learning suggests that the gain in the latter is rooted in a fundamentally different cause. To explain this phenomenon, we hypothesize that the non-convex loss landscape of a model training necessitates the optimization algorithm to go through two phases. In the first, the algorithm needs to select a good “basin” in the loss landscape. In the second, the algorithm solves an easy optimization within that basin. The former is a harder problem to solve with private data, while the latter is harder to solve with public data due to a distribution shift or data scarcity. Guided by this intuition, we provide theoretical constructions that provably demonstrate the separation between private training with and without public pretraining. Further, systematic experiments on CIFAR10 and Librispeech provide supporting evidence for our hypothesis. Arun Ganesh, Mahdi Haghifam, Milad Nasr, Sewoong Oh, Thomas Steinke 0002, Om Thakkar 0001, Abhradeep Thakurta, Lun Wang 0001 |
ICML | 1 |
| 2023 | (Amplified) Banded Matrix Factorization: A unified approach to private trainingabstractMatrix factorization (MF) mechanisms for differential privacy (DP) have substantially improved the state-of-the-art in privacy-utility-computation tradeoffs for ML applications in a variety of scenarios, but in both the centralized and federated settings there remain instances where either MF cannot be easily applied, or other algorithms provide better tradeoffs (typically, as $\epsilon$ becomes small).
In this work, we show how MF can subsume prior state-of-the-art algorithms in both federated and centralized training settings, across all privacy budgets. The key technique throughout is the construction of MF mechanisms with banded matrices (lower-triangular matrices with at most $\hat{b}$ nonzero bands including the main diagonal). For cross-device federated learning (FL), this enables multiple-participations with a relaxed device participation schema compatible with practical FL infrastructure (as demonstrated by a production deployment). In the centralized setting, we prove that banded matrices enjoy the same privacy amplification results as the ubiquitous DP-SGD algorithm, but can provide strictly better performance in most scenarios---this lets us always at least match DP-SGD, and often outperform it Christopher A. Choquette-Choo, Arun Ganesh, Ryan McKenna, H. Brendan McMahan, John Rush, Abhradeep Thakurta, Zheng Xu 0002 |
NeurIPS | 2 |
| 2023 | Faster Differentially Private Convex Optimization via Second-Order MethodsabstractDifferentially private (stochastic) gradient descent is the workhorse of DP private machine learning in both the convex and non-convex settings. Without privacy constraints, second-order methods, like Newton's method, converge faster than first-order methods like gradient descent. In this work, we investigate the prospect of using the second-order information from the loss function to accelerate DP convex optimization. We first develop a private variant of the regularized cubic Newton method of Nesterov and Polyak, and show that for the class of strongly convex loss functions, our algorithm has quadratic convergence and achieves the optimal excess loss. We then design a practical second-order DP algorithm for the unconstrained logistic regression problem. We theoretically and empirically study the performance of our algorithm. Empirical results show our algorithm consistently achieves the best excess loss compared to other baselines and is 10-40x faster than DP-GD/DP-SGD for challenging datasets. Arun Ganesh, Mahdi Haghifam, Thomas Steinke 0002, Abhradeep Thakurta |
NeurIPS | 1 |
| 2023 | Private (Stochastic) Non-Convex Optimization Revisited: Second-Order Stationary Points and Excess RisksabstractWe reconsider the challenge of non-convex optimization under differential privacy constraint. Building upon the previous variance-reduced algorithm SpiderBoost, we propose a novel framework that employs two types of gradient oracles: one that estimates the gradient at a single point and a more cost-effective option that calculates the gradient difference between two points. Our framework can ensure continuous accuracy of gradient estimations and subsequently enhances the rates of identifying second-order stationary points.
Additionally, we consider a more challenging task by attempting to locate the global minima of a non-convex objective via the exponential mechanism without almost any assumptions. Our preliminary results suggest that the regularized exponential mechanism can effectively emulate previous empirical and population risk bounds, negating the need for smoothness assumptions for algorithms with polynomial running time. Furthermore, with running time factors excluded, the exponential mechanism demonstrates promising population risk bound performance, and we provide a nearly matching lower bound. Daogao Liu, Arun Ganesh, Sewoong Oh, Abhradeep Thakurta |
NeurIPS | 2 |
| 2023 | Robust Algorithms for TSP and Steiner TreeabstractRobust optimization is a widely studied area in operations research, where the algorithm takes as input a range of values and outputs a single solution that performs well for the entire range. Specifically, a robust algorithm aims to minimize regret , defined as the maximum difference between the solution’s cost and that of an optimal solution in hindsight once the input has been realized. For graph problems in P , such as shortest path and minimum spanning tree, robust polynomial-time algorithms that obtain a constant approximation on regret are known. In this paper, we study robust algorithms for minimizing regret in NP -hard graph optimization problems, and give constant approximations on regret for the classical traveling salesman and Steiner tree problems. Arun Ganesh, Bruce M. Maggs, Debmalya Panigrahi |
ACM Trans. Algorithms | 1 |
| 2023 | Universal Algorithms for Clustering ProblemsabstractThis article presentsuniversalalgorithms for clustering problems, including the widely studiedk-median,k-means, andk-center objectives. The input is a metric space containing allpotentialclient locations. The algorithm must selectkcluster centers such that they are a good solution foranysubset of clients that actually realize. Specifically, we aim for lowregret, defined as the maximum over all subsets of the difference between the cost of the algorithm’s solution and that of an optimal solution. A universal algorithm’s solutionSolfor a clustering problem is said to be an α , β-approximation if for all subsets of clientsC′, it satisfiessol(C′) ≤ α ċopt(C′) + β ċmr, whereopt(C′ is the cost of the optimal solution for clients (C′) andmris the minimum regret achievable by any solution. Our main results are universal algorithms for the standard clustering objectives ofk-median,k-means, andk-center that achieve (O(1),O(1))-approximations. These results are obtained via a novel framework for universal algorithms using linear programming (LP) relaxations. These results generalize to other ℓp-objectives and the setting where some subset of the clients arefixed. We also give hardness results showing that (α, β)-approximation is NP-hard if α or β is at most a certain constant, even for the widely studied special case of Euclidean metric spaces. This shows that in some sense, (O(1),O(1))-approximation is the strongest type of guarantee obtainable for universal clustering. Arun Ganesh, Bruce M. Maggs, Debmalya Panigrahi |
ACM Trans. Algorithms | 1 |
| 2022 | Public Data-Assisted Mirror Descent for Private Model TrainingabstractIn this paper, we revisit the problem of using in-distribution public data to improve the privacy/utility trade-offs for differentially private (DP) model training. (Here, public data refers to auxiliary data sets that have no privacy concerns.) We design a natural variant of DP mirror descent, where the DP gradients of the private/sensitive data act as the linear term, and the loss generated by the public data as the mirror map. We show that, for linear regression with feature vectors drawn from a non-isotropic sub-Gaussian distribution, our algorithm, PDA-DPMD (a variant of mirror descent), provides population risk guarantees that are asymptotically better than the best known guarantees under DP (without having access to public data), when the number of public data samples is sufficiently large. We further show that our algorithm has natural “noise stability” properties that control the variance due to noise added to ensure DP. We demonstrate the efficacy of our algorithm by showing privacy/utility trade-offs on four benchmark datasets (StackOverflow, WikiText-2, CIFAR-10, and EMNIST). We show that our algorithm not only significantly improves over traditional DP-SGD, which does not have access to public data, but to our knowledge is the first to improve over DP-SGD on models that have been pre-trained with public data. Ehsan Amid, Arun Ganesh, Rajiv Mathews, Swaroop Ramaswamy, Shuang Song 0001, Thomas Steinke 0002, Vinith M. Suriyakumar, Om Thakkar 0001, Abhradeep Thakurta |
ICML | 2 |
| 2022 | How Compression and Approximation Affect Efficiency in String Distance MeasuresabstractReal-world data often comes in compressed form. Analyzing compressed data directly (without first decompressing it) can save space and time by orders of magnitude. In this work, we focus on fundamental sequence comparison problems and try to quantify the gain in time complexity when the underlying data is highly compressible. We consider grammar compression, which unifies many practically relevant compression schemes such as the Lempel–Ziv family, dictionary methods, and others. For two strings of total length N and total compressed size n, it is known that the edit distance and a longest common subsequence (LCS) can be computed exactly in time Õ(nN), as opposed to O(N2) for the uncompressed setting. Many real-world applications need to align multiple sequences simultaneously, and the fastest known exact algorithms for median edit distance and LCS of k strings run in O(Nk) time, whereas the one for center edit distance has a time complexity of O(N2k). This naturally raises the question if compression can help to reduce the running time significantly for k ≥ 3, perhaps to O(Nk/2 nk/2) or, more optimistically, to O(Nnk–1).1 Unfortunately, we show new lower bounds that rule out any improvement beyond Ω(Nk–1 n) time for any of these problems assuming the Strong Exponential Time Hypothesis (SETH), where again N and n represent the total length and the total compressed size, respectively. This answers an open question of Abboud, Backurs, Bringmann, and Künnemann (FOCS'17). In presence of such negative results, we ask if allowing approximation can help, and we show that approximation and compression together can be surprisingly effective for both multiple and two strings. We develop an Õ(Nk/2 nk/2)-time FPTAS for the median edit distance of k sequences, leading to a saving of nearly half the dimensions for highly-compressible sequences. In comparison, no O(Nk–Ω(1))-time PTAS is known for the median edit distance problem in the uncompressed setting. We obtain an improvement from for the center edit distance problem. For two strings, we get an -time FPTAS for both edit distance and LCS; note that this running time is o(N) whenever n ≪ N1/4. In contrast, for uncompressed strings, there is not even a subquadratic algorithm for LCS that has less than polynomial gap in the approximation factor. Building on the insight from our approximation algorithms, we also obtain several new and improved results for many fundamental distance measures including the edit, Hamming, and shift distances. Arun Ganesh, Tomasz Kociumaka, Andrea Lincoln, Barna Saha |
SODA | 1 |
| 2021 | Universal Algorithms for Clustering ProblemsabstractThis paper presents universal algorithms for clustering problems, including the widely studied k-median, k-means, and k-center objectives. The input is a metric space containing all potential client locations. The algorithm must select k cluster centers such that they are a good solution for any subset of clients that actually realize. Specifically, we aim for low regret, defined as the maximum over all subsets of the difference between the cost of the algorithm’s solution and that of an optimal solution. A universal algorithm’s solution sol for a clustering problem is said to be an (α, β)-approximation if for all subsets of clients C', it satisfies sol(C') ≤ α ⋅ opt(C') + β ⋅ mr, where opt(C') is the cost of the optimal solution for clients C' and mr is the minimum regret achievable by any solution. Our main results are universal algorithms for the standard clustering objectives of k-median, k-means, and k-center that achieve (O(1), O(1))-approximations. These results are obtained via a novel framework for universal algorithms using linear programming (LP) relaxations. These results generalize to other 𝓁_p-objectives and the setting where some subset of the clients are fixed. We also give hardness results showing that (α, β)-approximation is NP-hard if α or β is at most a certain constant, even for the widely studied special case of Euclidean metric spaces. This shows that in some sense, (O(1), O(1))-approximation is the strongest type of guarantee obtainable for universal clustering. Arun Ganesh, Bruce M. Maggs, Debmalya Panigrahi |
ICALP | 1 |
| 2021 | Online Service with Delay
Yossi Azar, Arun Ganesh, Rong Ge 0001, Debmalya Panigrahi |
ACM Trans. Algorithms | 2 |
| 2020 | Robust Algorithms for TSP and Steiner TreeabstractRobust optimization is a widely studied area in operations research, where the algorithm takes as input a range of values and outputs a single solution that performs well for the entire range. Specifically, a robust algorithm aims to minimize regret, defined as the maximum difference between the solution’s cost and that of an optimal solution in hindsight once the input has been realized. For graph problems in P, such as shortest path and minimum spanning tree, robust polynomial-time algorithms that obtain a constant approximation on regret are known. In this paper, we study robust algorithms for minimizing regret in NP-hard graph optimization problems, and give constant approximations on regret for the classical traveling salesman and Steiner tree problems. Arun Ganesh, Bruce M. Maggs, Debmalya Panigrahi |
ICALP | 1 |
| 2020 | Faster Differentially Private Samplers via Rényi Divergence Analysis of Discretized Langevin MCMCabstractVarious differentially private algorithms instantiate the exponential mechanism, and require sampling from the distribution $\exp(-f)$ for a suitable function $f$. When the domain of the distribution is high-dimensional, this sampling can be challenging. Using heuristic sampling schemes such as Gibbs sampling does not necessarily lead to provable privacy. When $f$ is convex, techniques from log-concave sampling lead to polynomial-time algorithms, albeit with large polynomials. Langevin dynamics-based algorithms offer much faster alternatives under some distance measures such as statistical distance. In this work, we establish rapid convergence for these algorithms under distance measures more suitable for differential privacy. For smooth, strongly-convex $f$, we give the first results proving convergence in R\'enyi divergence. This gives us fast differentially private algorithms for such $f$. Our techniques and simple and generic and apply also to underdamped Langevin dynamics. Arun Ganesh, Kunal Talwar |
NeurIPS | 1 |
| 2020 | Near-Linear Time Edit Distance for Indel ChannelsabstractWe consider the following model for sampling pairs of strings: $s_1$ is a uniformly random bitstring of length $n$, and $s_2$ is the bitstring arrived at by applying substitutions, insertions, and deletions to each bit of $s_1$ with some probability. We show that the edit distance between $s_1$ and $s_2$ can be computed in $O(n \ln n)$ time with high probability, as long as each bit of $s_1$ has a mutation applied to it with probability at most a small constant. The algorithm is simple and only uses the textbook dynamic programming algorithm as a primitive, first computing an approximate alignment between the two strings, and then running the dynamic programming algorithm restricted to entries close to the approximate alignment. The analysis of our algorithm provides theoretical justification for alignment heuristics used in practice such as BLAST, FASTA, and MAFFT, which also start by computing approximate alignments quickly and then find the best alignment near the approximate alignment. Our main technical contribution is a partitioning of alignments such that the number of the subsets in the partition is not too large and every alignment in one subset is worse than an alignment considered by our algorithm with high probability. Similar techniques may be of interest in the average-case analysis of other problems commonly solved via dynamic programming. Arun Ganesh, Aaron Sy |
WABI | 1 |
| 2019 | Optimal sequence length requirements for phylogenetic tree reconstruction with indelsabstractWe consider the phylogenetic tree reconstruction problem with insertions and deletions (indels). Phylogenetic algorithms proceed under a model where sequences evolve down the model tree, and given sequences at the leaves, the problem is to reconstruct the model tree with high probability. Traditionally, sequences mutate by substitution-only processes, although some recent work considers evolutionary processes with insertions and deletions. In this paper, we improve on previous work by giving a reconstruction algorithm that simultaneously has O(poly logn) sequence length and tolerates constant indel probabilities on each edge. Our recursively-reconstructed distance-based technique provably outputs the model tree when the model tree has O(poly logn) diameter and discretized branch lengths, allowing for the probability of insertion and deletion to be non-uniform and asymmetric on each edge. Our polylogarithmic sequence length bounds improve significantly over previous polynomial sequence length bounds and match sequence length bounds in the substitution-only models of phylogenetic evolution, thereby challenging the idea that many global misalignments caused by insertions and deletions when pindel is large are a fundamental obstruction to reconstruction with short sequences. Arun Ganesh, Qiuyi Zhang 0001 |
STOC | 1 |
| 2017 | Online service with delayabstractIn this article, we introduce the online service with delay problem. In this problem, there are n points in a metric space that issue service requests over time, and there is a server that serves these requests. The goal is to minimize the sum of distance traveled by the server and the total delay (or a penalty function thereof) in serving the requests. This problem models the fundamental tradeoff between batching requests to improve locality and reducing delay to improve response time, which has many applications in operations management, operating systems, logistics, supply chain management, and scheduling. Our main result is to show a poly-logarithmic competitive ratio for the online service with delay problem. This result is obtained by an algorithm that we call the preemptive service algorithm . The salient feature of this algorithm is a process called preemptive service, which uses a novel combination of (recursive) time forwarding and spatial exploration on a metric space. We also generalize our results to k > 1 servers and obtain stronger results for special metrics such as uniform and star metrics that correspond to (weighted) paging problems. Yossi Azar, Arun Ganesh, Rong Ge 0001, Debmalya Panigrahi |
STOC | 2 |