Scientific research articles, typically distributed in PDF format, contain valuable knowledge but remain challenging to convert into structured datasets due to fragmented workflows that separate parsing, annotation, and visualization. Existing annotation platforms operate on plain text, which requires an additional PDF-to-text conversion step before annotation, while PDF parsing tools lack automated annotation suggestions. To bridge this gap, we introduce Docora, a system that unifies PDF parsing, automated annotation assistance, and multi-view visualization into a single interactive platform. Docora enables researchers to configure entity and relation schemas for any domain, automatically generates initial annotations using rule-based, model-based, or LLM-based extractors, and provides synchronized visualizations across PDF, text, and graph views. Users can refine annotations directly on the PDF canvas, ensuring consistency between document layout and structured representations. The system’s source code is publicly available to facilitate further research and development.

Polymers are widely used in diverse fields, and the demand for efficient methods to extract and organize information about them is increasing. An automated approach that utilizes machine learning can accurately extract relevant information from scientific papers, providing a promising solution for automating information extraction using annotated training data. In this paper, we introduce a polymer-relevant ontology featuring crucial entities and relations to enhance information extraction in the polymer science field. Our ontology is customizable to adapt to specific research needs. We present PolyNERE, a high-quality named entity recognition (NER) and relation extraction (RE) corpus comprising 750 polymer abstracts annotated using our ontology. Distinctive features of PolyNERE include multiple entity types, relation categories, support for various NER settings, and the ability to assert entities and relations at different levels. PolyNERE also facilitates reasoning in the RE task through supporting evidence. While our experiments with recent advanced methods achieved promising results, challenges persist in adapting NER and RE from abstracts to full-text paragraphs. This emphasizes the need for robust information extraction systems in the polymer domain, making our corpus a valuable benchmark for future developments.