The class PLS (Polynomial Local Search) captures the complexity of finding a solution that is locally optimal and has proven to be an important concept in the theory of local search. It has been shown that local search versions of various combinatorial optimization problems, such as Maximum Independent Set and Max Cut, are complete for this class. Such computational intractability typically arises in local search problems allowing arbitrary weights; in contrast, for unweighted problems, locally optimal solutions can be found in polynomial time under standard settings. In this paper, we pursue the complexity of local search problems from a different angle: We show that computing two locally optimal solutions is NP-hard for various natural unweighted local search problems, including Maximum Independent Set, Minimum Dominating Set, Max SAT, and Max Cut. We also discuss several tractable cases for finding two (or more) local optimal solutions.

Abstract Graphlets of order k in a graph G are connected subgraphs induced by k nodes (called k-graphlets) or by k edges (called edge k-graphlets). They are among the interesting subgraphs in network analysis to get insights on both the local and global structure of a network. While several algorithms exist for discovering and enumerating graphlets, the amortized time complexity of such algorithms typically depends on the size of the graph G, or its maximum degree. In real networks, even the latter can be in the order of millions, whereas k is typically required to be a small value. In this paper we provide the first algorithm to list all graphlets of order k in a graph $$G=(V,E)$$ G = ( V , E ) with an amortized time complexity depending solely on the order k, contrarily to previous approaches where the cost depends also on the size of G or its maximum degree. Specifically, we show that it is possible to list k-graphlets in $$O(k^2)$$ O ( k 2 ) time per solution, and to list edge k-graphlets in O(k) time per solution. Furthermore we show that, if the input graph has bounded degree, then the amortized time for listing k-graphlets is reduced to O(k). Whenever $$k = O(1)$$ k = O ( 1 ) , as it is often the case in practical settings, these algorithms are the first to achieve constant time per solution.

A property Π on a finite set U is monotone if for every X ⊆ U satisfying Π , every superset Y ⊆ U of X also satisfies Π . Many combinatorial properties can be seen as monotone properties. The problem of finding a subset of U satisfying Π with the minimum weight is a central problem in combinatorial optimization. Although many approximate/exact algorithms have been developed to solve this kind of problem on numerous properties, a solution obtained by these algorithms is often unsuitable for real-world applications due to the difficulty of building accurate mathematical models on real-world problems. A promising approach to overcome this difficulty is to enumerate multiple small solutions rather than to find a single small solution. To this end, given a weight function w : U → Q > 0 and k ∈ Q > 0 , we devise algorithms that approximately enumerate all minimal subsets of U with weight at most k satisfying Π for various monotone properties Π , where “approximate enumeration” means that algorithms output all minimal subsets satisfying Π whose weight is at most k and may output some minimal subsets satisfying Π whose weight exceeds k but is at most c k for some constant c ≥ 1 . These algorithms allow us to efficiently enumerate minimal vertex covers, minimal dominating sets in bounded degree graphs, minimal feedback vertex sets, minimal hitting sets in bounded rank hypergraphs, etc., of weight at most k with constant approximation factors.

Frequent pattern mining is widely used to find "important" or "interesting" patterns in data. While it is not easy to mathematically define such patterns, maximal frequent patterns are promising candidates, as frequency is a natural indicator of relevance and maximality helps to summarize the output. As such, their mining has been studied on various data types, including itemsets, graphs, and strings. The complexity of mining maximal frequent itemsets and subtrees has been thoroughly investigated (e.g., [Boros et al., 2003], [Uno et al., 2004]) in the literature. On the other hand, while the idea of mining frequent subsequences in sequential data was already introduced in the seminal paper [Agrawal et al., 1995], the complexity of the problem is still open. In this paper, we investigate the complexity of the maximal common subsequence enumeration problem, which is both an important special case of maximal frequent subsequence mining and a generalization of the classic longest common subsequence (LCS) problem. We show the hardness of enumerating maximal common subsequences between multiple strings, ruling out the possibility of an output-polynomial time enumeration algorithm under ¶ ≠ NP, that is, an algorithm that runs in time poly(| I | + N ), where | I | and N are the size of the input and number of output solutions, respectively. To circumvent this intractability, we also investigate the parameterized complexity of the problem, and show several results when the alphabet size, the number of strings, and the length of a string are taken into account as parameters.

Finding a \emph{single} best solution is the most common objective in combinatorial optimization problems. However, such a single solution may not be applicable to real-world problems as objective functions and constraints are only ``approximately'' formulated for original real-world problems. To solve this issue, finding \emph{multiple} solutions is a natural direction, and diversity of solutions is an important concept in this context. Unfortunately, finding diverse solutions is much harder than finding a single solution. To cope with the difficulty, we investigate the approximability of finding diverse solutions. As a main result, we propose a framework to design approximation algorithms for finding diverse solutions, which yields several outcomes including constant-factor approximation algorithms for finding diverse matchings in graphs and diverse common bases in two matroids and PTASes for finding diverse minimum cuts and interval schedulings.

LZ-End is a variant of the well-known Lempel-Ziv parsing family such that each phrase of the parsing has a previous occurrence, with the additional constraint that the previous occurrence must end at the end of a previous phrase. LZ-End was initially proposed as a greedy parsing, where each phrase is determined greedily from left to right, as the longest factor that satisfies the above constraint~[Kreft & Navarro, 2010]. In this work, we consider an optimal LZ-End parsing that has the minimum number of phrases in such parsings. We show that a decision version of computing the optimal LZ-End parsing is NP-complete by showing a reduction from the vertex cover problem. Moreover, we give a MAX-SAT formulation for the optimal LZ-End parsing adapting an approach for computing various NP-hard repetitiveness measures recently presented by [Bannai et al., 2022]. We also consider the approximation ratio of the size of greedy LZ-End parsing to the size of the optimal LZ-End parsing, and give a lower bound of the ratio which asymptotically approaches $2$.

Finding a maximum cardinality common independent set in two matroids (also known as \textsc{Matroid Intersection}) is a classical combinatorial optimization problem, which generalizes several well-known problems, such as finding a maximum bipartite matching, a maximum colorful forest, and an arborescence in directed graphs. Enumerating all maximal common independent sets in two (or more) matroids is a classical enumeration problem. In this paper, we address an ``intersection'' of these problems: Given two matroids and a threshold $τ$, the goal is to enumerate all maximal common independent sets in the matroids with cardinality at least $τ$. We show that this problem can be solved in polynomial delay and polynomial space. Moreover, our technique can be extended to a more general problem, which is relevant to Matroid Matching. We give a polynomial-delay and polynomial-space algorithm for enumerating all maximal ``matchings'' with cardinality at least $τ$, assuming that the optimization counterpart is ``tractable'' in a certain sense. This extension allows us to enumerate small minimal connected vertex covers in subcubic graphs. We also discuss a framework to convert enumeration with cardinality constraints into ranked enumeration.

Finding diverse solutions in combinatorial problems recently has received considerable attention (Baste et al. 2020; Fomin et al. 2020; Hanaka et al. 2021). In this paper we study the following type of problems: given an integer k, the problem asks for k solutions such that the sum of pairwise (weighted) Hamming distances between these solutions is maximized. Such solutions are called diverse solutions. We present a polynomial-time algorithm for finding diverse shortest st-paths in weighted directed graphs. Moreover, we study the diverse version of other classical combinatorial problems such as diverse weighted matroid bases, diverse weighted arborescences, and diverse bipartite matchings. We show that these problems can be solved in polynomial time as well. To evaluate the practical performance of our algorithm for finding diverse shortest st-paths, we conduct a computational experiment with synthetic and real-world instances. The experiment shows that our algorithm successfully computes diverse solutions within reasonable computational time.

Kimelfeld and Sagiv [Kimelfeld and Sagiv, PODS 2006], [Kimelfeld and Sagiv, Inf. Syst. 2008] pointed out that the problem of enumerating K-fragments is of great importance in a keyword search on data graphs. In a graph-theoretic term, the problem corresponds to enumerating minimal Steiner trees in (directed) graphs. In this paper, we propose a linear-delay and polynomial-space algorithm for enumerating all minimal Steiner trees, improving on a previous result in [Kimelfeld and Sagiv, Inf. Syst. 2008]. Our enumeration algorithm can be extended to other Steiner problems, such as minimal Steiner forests, minimal terminal Steiner trees, and minimal directed Steiner trees. As another variant of the minimal Steiner tree enumeration problem, we study the problem of enumerating minimal induced Steiner subgraphs. We propose a polynomial-delay and exponential-space enumeration algorithm of minimal induced Steiner subgraphs on claw-free graphs. Contrary to these tractable results, we show that the problem of enumerating minimal group Steiner trees is at least as hard as the minimal transversal enumeration problem on hypergraphs.

In this paper, we consider enumeration problems for edge-distinct and vertex-distinct Eulerian trails. Two Eulerian trails are said to be edge-distinct if the edge sequences are not identical, and they are said to be vertex-distinct if the vertex sequences are not identical. To solve these problems, we propose optimal enumeration algorithms that run in O(N+m) total time, where N is the number of solutions and m is the number of edges in an input connected graph. The proposed algorithms are based on the reverse search technique introduced by [Avis and Fukuda, DAM 1996], and the push-out amortization technique introduced by [Uno, WADS 2015].

Mathematical modeling is a standard approach to solve many real-world problems and diversity of solutions is an important issue, emerging in applying solutions obtained from mathematical models to real-world problems. Many studies have been devoted to finding diverse solutions. Baste et al. (Algorithms 2019, IJCAI 2020) recently initiated the study of computing diverse solutions of combinatorial problems from the perspective of fixed-parameter tractability. They considered problems of finding r solutions that maximize some diversity measures (the minimum or sum of the pairwise Hamming distances among them) and gave some fixed-parameter tractable algorithms for the diverse version of several well-known problems, such as Vertex Cover, Feedback Vertex Set, d-Hitting Set}, and problems on bounded-treewidth graphs. In this work, we further investigate the (fixed-parameter) tractability of problems of finding diverse spanning trees, paths, and several subgraphs. In particular, we show that, given a graph G and an integer r, the problem of computing r spanning trees of G maximizing the sum of the pairwise Hamming distances among them can be solved in polynomial time. To the best of the authors' knowledge, this is the first polynomial-time solvable case for finding diverse solutions of unbounded size.

A k-anticover of a string x is a set of pairwise distinct factors of x of equal length k, such that every symbol of x is contained into an occurrence of at least one of those factors. The existence of a k-anticover can be seen as a notion of non-redundancy, which has application in computational biology, where they are associated with various non-regulatory mechanisms. In this paper we address the complexity of the problem of finding a k-anticover of a string x if it exists, showing that the decision problem is NP-complete on general strings for k ≥ 3. We also show that the problem admits a polynomial-time solution for k=2. For unbounded k, we provide an exact exponential algorithm to find a k-anticover of a string of length n (or determine that none exists), which runs in O*(min {3^{(n-k)/3)}, ((k(k+1))/2)^{n/(k+1)) time using polynomial space.

Let $G = (V, E)$ be an undirected graph and let $B \subseteq V \times V$ be a set of terminal pairs. A node/edge multicut is a subset of vertices/edges of $G$ whose removal destroys all the paths between every terminal pair in $B$. The problem of computing a {\em minimum} node/edge multicut is NP-hard and extensively studied from several viewpoints. In this paper, we study the problem of enumerating all {\em minimal} node multicuts. We give an incremental polynomial delay enumeration algorithm for minimal node multicuts, which extends an enumeration algorithm due to Khachiyan et al. (Algorithmica, 2008) for minimal edge multicuts. Important special cases of node/edge multicuts are node/edge {\em multiway cuts}, where the set of terminal pairs contains every pair of vertices in some subset $T \subseteq V$, that is, $B = T \times T$. We improve the running time bound for this special case: We devise a polynomial delay and exponential space enumeration algorithm for minimal node multiway cuts and a polynomial delay and space enumeration algorithm for minimal edge multiway cuts.

A dominating set $D$ of a graph $G$ is a set of vertices such that any vertex in $G$ is in $D$ or its neighbor is in $D$. Enumeration of minimal dominating sets in a graph is one of central problems in enumeration study since enumeration of minimal dominating sets corresponds to enumeration of minimal hypergraph transversal. However, enumeration of dominating sets including non-minimal ones has not been received much attention. In this paper, we address enumeration problems for dominating sets from sparse graphs which are degenerate graphs and graphs with large girth, and we propose two algorithms for solving the problems. The first algorithm enumerates all the dominating sets for a $k$-degenerate graph in $O(k)$ time per solution using $O(n + m)$ space, where $n$ and $m$ are respectively the number of vertices and edges in an input graph. That is, the algorithm is optimal for graphs with constant degeneracy such as trees, planar graphs, $H$-minor free graphs with some fixed $H$. The second algorithm enumerates all the dominating sets in constant time per solution for input graphs with girth at least nine.