Recent advancements in computer vision have seen Implicit Neural Representations (INR) becoming a dominant representation form for data due to their compactness and expressive power. To solve various vision tasks with INR data, vision networks can either be purely INR-based, but are thereby limited by simplistic operations and performance constraints, or include raster-based methods, which then tend to lose crucial structural information of the INR during the conversion process. To address these issues, we propose DVI, a novel Derivative-based Vision network for INR, capable of handling a variety of vision tasks across various data modalities, while achieving the best performance among the existing methods by incorporating state of the art raster-based methods into a INR based architecture. DVI excels by extracting semantic information from the high order derivative map of the INR, then seamlessly fusing it into a pre-existing raster-based vision network, enhancing its performance with deeper, task-relevant semantic insights. Extensive experiments on five vision tasks across three data modalities demonstrate DVI's superiority over existing methods. Additionally, our study encompasses comprehensive ablation studies to affirm the efficacy of each element of DVI, the influence of different derivative computation techniques and the impact of derivative orders. Reproducible codes are provided in the supplementary materials.

Causal discovery in time-series is a fundamental problem in the machine learning community, enabling causal reasoning and decision-making in complex scenarios. Recently, researchers successfully discover causality by combining neural networks with Granger causality, but their performances degrade largely when encountering high-dimensional data because of the highly redundant network design and huge causal graphs. Moreover, the missing entries in the observations further hamper the causal structural learning. To overcome these limitations, We propose CUTS+, which is built on the Granger-causality-based causal discovery method CUTS and raises the scalability by introducing a technique called Coarse-to-fine-discovery (C2FD) and leveraging a message-passing-based graph neural network (MPGNN). Compared to previous methods on simulated, quasi-real, and real datasets, we show that CUTS+ largely improves the causal discovery performance on high-dimensional data with different types of irregular sampling.

Decentralized online learning (online learning in decentralized networks) has been attracting more and more attention, since it is believed that decentralized online learning can help data providers cooperatively better solve their online problems without sharing their private data to a third party or other providers. Typically, the cooperation is achieved by letting the data providers exchange their models between neighbors, e.g., recommendation model. However, the best regret bound for a decentralized online learning algorithm is 𝒪( n √ T ), where n is the number of nodes (or users) and T is the number of iterations. This is clearly insignificant, since this bound can be achieved without any communication in the networks. This reminds us to ask a fundamental question: Can people really get benefit from the decentralized online learning by exchanging information? In this article, we studied when and why the communication can help the decentralized online learning to reduce the regret. Specifically, each loss function is characterized by two components: the adversarial component and the stochastic component. Under this characterization, we show that decentralized online gradient enjoys a regret bound \( {\mathcal {O}(\sqrt {n^2TG^2 + n T \sigma ^2})} \) , where G measures the magnitude of the adversarial component in the private data (or equivalently the local loss function) and σ measures the randomness within the private data. This regret suggests that people can get benefits from the randomness in the private data by exchanging private information. Another important contribution of this article is to consider the dynamic regret—a more practical regret to track users’ interest dynamics. Empirical studies are also conducted to validate our analysis.

SUMMARY: DeepKG is an end-to-end deep learning-based workflow that helps researchers automatically mine valuable knowledge in biomedical literature. Users can utilize it to establish customized knowledge graphs in specified domains, thus facilitating in-depth understanding on disease mechanisms and applications on drug repurposing and clinical research. To improve the performance of DeepKG, a cascaded hybrid information extraction framework is developed for training model of 3-tuple extraction, and a novel AutoML-based knowledge representation algorithm (AutoTransX) is proposed for knowledge representation and inference. The system has been deployed in dozens of hospitals and extensive experiments strongly evidence the effectiveness. In the context of 144 900 COVID-19 scholarly full-text literature, DeepKG generates a high-quality knowledge graph with 7980 entities and 43 760 3-tuples, a candidate drug list, and relevant animal experimental studies are being carried out. To accelerate more studies, we make DeepKG publicly available and provide an online tool including the data of 3-tuples, potential drug list, question answering system, visualization platform. AVAILABILITY AND IMPLEMENTATION: All the results are publicly available at the website (http://covidkg.ai/). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.