Jessica Shi 0001

dblp:211/8126 · DBLP profile ↗
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10ranked-venue papers
3as first author
10since 2021 · last 2025
0000-0003-4485-5492ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 4 · 3 first-author · 4 since 2021Artificial intelligence and machine learning · 2 · 2 since 2021Theory of computation · 2 · 2 since 2021Systems, architecture and hardware · 1 · 1 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 since 2021
YearPublicationVenuePosition
2025 FreeForm: Flexibly Augmenting Formulas with Synchronized Markup and Graphical Edits
Jeffrey Tao, Litao Yan, Jessica Shi 0001, Mia Ginsberg, Andrew Head
CHI3
2024 Parallel Algorithms for Hierarchical Nucleus Decomposition
abstract
Nucleus decompositions have been shown to be a useful tool for finding dense subgraphs. The coreness value of a clique represents its density based on the number of other cliques it is adjacent to. One useful output of nucleus decomposition is to generate a hierarchy among dense subgraphs at different resolutions. However, existing parallel algorithms for nucleus decomposition do not generate this hierarchy, and only compute the coreness values. This paper presents a scalable parallel algorithm for hierarchy construction, with practical optimizations, such as interleaving the coreness computation with hierarchy construction and using a concurrent union-find data structure in an innovative way to generate the hierarchy. We also introduce a parallel approximation algorithm for nucleus decomposition, which achieves much lower span in theory and better performance in practice. We prove strong theoretical bounds on the work and span (parallel time) of our algorithms. On a 30-core machine with two-way hyper-threading, our parallel hierarchy construction algorithm achieves up to a 58.84x speedup over the state-of-the-art sequential hierarchy construction algorithm by Sariyuce et al. and up to a 30.96x self-relative parallel speedup. On the same machine, our approximation algorithm achieves a 3.3x speedup over our exact algorithm, while generating coreness estimates with a multiplicative error of 1.33x on average.
Jessica Shi 0001, Laxman Dhulipala, Julian Shun
Proc. ACM Manag. Data1
2024 The ParClusterers Benchmark Suite (PCBS): A Fine-Grained Analysis of Scalable Graph Clustering
abstract
We introduce the ParClusterers Benchmark Suite (PCBS)---a collection of highly scalable parallel graph clustering algorithms and benchmarking tools that streamline comparing different graph clustering algorithms and implementations. The benchmark includes clustering algorithms that target a wide range of modern clustering use cases, including community detection, classification, and dense subgraph mining. The benchmark toolkit makes it easy to run and evaluate multiple instances of different clustering algorithms with respect to both the running time and quality. We evaluate the PCBS algorithms empirically and find that they deliver both the state of the art quality and the running time. In terms of the running time, they are on average over 4x faster than the fastest library we compared to. In terms of quality, the correlation clustering algorithm [Shi et al., VLDB'21] optimizing for the LambdaCC objective, which does not have a direct counterpart in other libraries, delivers the highest quality in the majority of datasets that we used.
Shangdi Yu, Jessica Shi 0001, Jamison Meindl, David Eisenstat, Xiaoen Ju, Sasan Tavakkol, Laxman Dhulipala, Jakub Lacki, Vahab S. Mirrokni, Julian Shun
Proc. VLDB Endow.2
2022 Differential Privacy from Locally Adjustable Graph Algorithms: k-Core Decomposition, Low Out-Degree Ordering, and Densest Subgraphs
abstract
Differentially private algorithms allow large-scale data analytics while preserving user privacy. Designing such algorithms for graph data is gaining importance with the growth of large networks that model various (sensitive) relationships between individuals. While there exists a rich history of important literature in this space, to the best of our knowledge, no results formalize a relationship between certain parallel and distributed graph algorithms and differentially private graph analysis. In this paper, we define locally adjustable graph algorithms and show that algorithms of this type can be transformed into differentially private algorithms. Our formalization is motivated by a set of results that we present in the central and local models of differential privacy for a number of problems, including k-core decomposition, low out-degree ordering, and densest subgraphs. First, we design an $\varepsilon$-edge differentially private (DP) algorithm that returns a subset of nodes that induce a subgraph of density at least $ \frac{D^{*}}{1+\eta}-O(\operatorname{poly}(\log n)/\varepsilon)$, where $D^{*}$ is the density of the densest subgraph in the input graph (for any constant $\eta\gt 0$). This algorithm achieves a two-fold improvement on the multiplicative approximation factor of the previously best-known private densest subgraph algorithms while maintaining a near-linear runtime. Then, we present an $\varepsilon$-locally edge differentially private (LEDP) algorithm for k-core decompositions. Our LEDP algorithm provides approximates the core numbers (for any constant $\eta\gt 0$) with $(2+\eta)$ multiplicative and $O(\operatorname{poly}(\log n)/\varepsilon)$ additive error. This is the first differentially private algorithm that outputs private k-core decomposition statistics. We also modify our algorithm to return a differentially private low out-degree ordering of the nodes, where orienting the edges from nodes earlier in the ordering to nodes later in the ordering results in out-degree at most $O(d+$ poly $(\log n)/\varepsilon$) (where d is the degeneracy of the graph). A small modification to the algorithm also yields a $\varepsilon$-LEDP algorithm for $(4+\eta,O(\operatorname{poly}(\log n)/\varepsilon))$ approximate densest subgraph (which returns both the set of nodes in the subgraph and its density). Our algorithm uses $O(\log^{2}n)$ rounds of communication between the curator and individual nodes.
Laxman Dhulipala, Quanquan C. Liu, Sofya Raskhodnikova, Jessica Shi 0001, Julian Shun, Shangdi Yu
FOCS4
2022 Hierarchical Agglomerative Graph Clustering in Poly-Logarithmic Depth
abstract
Obtaining scalable algorithms for \emph{hierarchical agglomerative clustering} (HAC) is of significant interest due to the massive size of real-world datasets. At the same time, efficiently parallelizing HAC is difficult due to the seemingly sequential nature of the algorithm. In this paper, we address this issue and present ParHAC, the first efficient parallel HAC algorithm with sublinear depth for the widely-used average-linkage function. In particular, we provide a $(1+\epsilon)$-approximation algorithm for this problem on $m$ edge graphs using $\tilde{O}(m)$ work and poly-logarithmic depth. Moreover, we show that obtaining similar bounds for \emph{exact} average-linkage HAC is not possible under standard complexity-theoretic assumptions.We complement our theoretical results with a comprehensive study of the ParHAC algorithm in terms of its scalability, performance, and quality, and compare with several state-of-the-art sequential and parallel baselines. On a broad set of large publicly-available real-world datasets, we find that ParHAC obtains a 50.1x speedup on average over the best sequential baseline, while achieving quality similar to the exact HAC algorithm. We also show that ParHAC can cluster one of the largest publicly available graph datasets with 124 billion edges in a little over three hours using a commodity multicore machine.
Laxman Dhulipala, David Eisenstat, Jakub Lacki, Vahab S. Mirrokni, Jessica Shi 0001
NeurIPS5
2022 Parallel Batch-Dynamic Algorithms for k-Core Decomposition and Related Graph Problems
abstract
Maintaining a k-core decomposition quickly in a dynamic graph has important applications in network analysis. The main challenge for designing efficient exact algorithms is that a single update to the graph can cause significant global changes. Our paper focuses on approximation algorithms with small approximation factors that are much more efficient than what exact algorithms can obtain.
Quanquan C. Liu, Jessica Shi 0001, Shangdi Yu, Laxman Dhulipala, Julian Shun
SPAA2
2021 Hierarchical Agglomerative Graph Clustering in Nearly-Linear Time
abstract
We study the widely-used hierarchical agglomerative clustering (HAC) algorithm on edge-weighted graphs. We define an algorithmic framework for hierarchical agglomerative graph clustering that provides the first efficient $\tilde{O}(m)$ time exact algorithms for classic linkage measures, such as complete- and WPGMA-linkage, as well as other measures. Furthermore, for average-linkage, arguably the most popular variant of HAC, we provide an algorithm that runs in $\tilde{O}(n\sqrt{m})$ time. For this variant, this is the first exact algorithm that runs in subquadratic time, as long as $m=n^{2-\epsilon}$ for some constant $\epsilon > 0$. We complement this result with a simple $\epsilon$-close approximation algorithm for average-linkage in our framework that runs in $\tilde{O}(m)$ time. As an application of our algorithms, we consider clustering points in a metric space by first using $k$-NN to generate a graph from the point set, and then running our algorithms on the resulting weighted graph. We validate the performance of our algorithms on publicly available datasets, and show that our approach can speed up clustering of point datasets by a factor of 20.7–76.5x.
Laxman Dhulipala, David Eisenstat, Jakub Lacki, Vahab S. Mirrokni, Jessica Shi 0001
ICML5
2021 Parallel Five-Cycle Counting Algorithms
abstract
Counting the frequency of subgraphs in large networks is a classic research question that reveals the underlying substructures of these networks for important applications. However, subgraph counting is a challenging problem, even for subgraph sizes as small as five, due to the combinatorial explosion in the number of possible occurrences. This paper focuses on the five-cycle, which is an important special case of five-vertex subgraph counting and one of the most difficult to count efficiently. We design two new parallel five-cycle counting algorithms and prove that they are work-efficient and achieve polylogarithmic span. Both algorithms are based on computing low out-degree orientations, which enables the efficient computation of directed two-paths and three-paths, and the algorithms differ in the ways in which they use this orientation to eliminate double-counting. We develop fast multicore implementations of the algorithms and propose a work scheduling optimization to improve their performance. Our experiments on a variety of real-world graphs using a 36-core machine with two-way hyper-threading show that our algorithms achieves 10-46x self-relative speed-up, outperform our serial benchmarks by 10-32x, and outperform the previous state-of-the-art serial algorithm by up to 818x.
Louisa Ruixue Huang, Jessica Shi 0001, Julian Shun
SEA2
2021 Scalable Community Detection via Parallel Correlation Clustering
abstract
Graph clustering and community detection are central problems in modern data mining. The increasing need for analyzing billion-scale data calls for faster and more scalable algorithms for these problems. There are certain trade-offs between the quality and speed of such clustering algorithms. In this paper, we design scalable algorithms that achieve high quality when evaluated based on ground truth. We develop a generalized sequential and shared-memory parallel framework based on the LAMBDACC objective (introduced by Veldt et al.), which encompasses modularity and correlation clustering. Our framework consists of highly-optimized implementations that scale to large data sets of billions of edges and that obtain high-quality clusters compared to ground-truth data, on both unweighted and weighted graphs. Our empirical evaluation shows that this framework improves the state-of-the-art trade-offs between speed and quality of scalable community detection. For example, on a 30-core machine with two-way hyper-threading, our implementations achieve orders of magnitude speedups over other correlation clustering baselines, and up to 28.44× speedups over our own sequential baselines while maintaining or improving quality.
Jessica Shi 0001, Laxman Dhulipala, David Eisenstat, Jakub Lacki, Vahab S. Mirrokni
Proc. VLDB Endow.1
2021 Theoretically and Practically Efficient Parallel Nucleus Decomposition
abstract
This paper studies the nucleus decomposition problem, which has been shown to be useful in finding dense substructures in graphs. We present a novel parallel algorithm that is efficient both in theory and in practice. Our algorithm achieves a work complexity matching the best sequential algorithm while also having low depth (parallel running time), which significantly improves upon the only existing parallel nucleus decomposition algorithm (Sariyüce et al. , PVLDB 2018). The key to the theoretical efficiency of our algorithm is a new lemma that bounds the amount of work done when peeling cliques from the graph, combined with the use of a theoretically-efficient parallel algorithms for clique listing and bucketing. We introduce several new practical optimizations, including a new multi-level hash table structure to store information on cliques space-efficiently and a technique for traversing this structure cache-efficiently. On a 30-core machine with two-way hyper-threading on real-world graphs, we achieve up to a 55x speedup over the state-of-the-art parallel nucleus decomposition algorithm by Sariyüce et al. , and up to a 40x self-relative parallel speedup. We are able to efficiently compute larger nucleus decompositions than prior work on several million-scale graphs for the first time.
Jessica Shi 0001, Laxman Dhulipala, Julian Shun
Proc. VLDB Endow.1