Diego Díaz-Domínguez

dblp:220/4069 · DBLP profile ↗
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6ranked-venue papers in the field
6as first author
5since 2021 · last 2025
0000-0002-9071-0254ORCID · verified

Domains — venue-derived; a paper can count in several

Information Retrieval & Web Search · 5 (5 first)Big Data, Cloud & Distributed Data Systems · 1 (1 first)
YearPublicationVenuePosition
2025 Prefix-Free Parsing for Merging Big BWTs
Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Lipták, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar
SPIRE1
2023 Computing All-vs-All MEMs in Grammar-Compressed Text
Diego Díaz-Domínguez, Leena Salmela
SPIRE1
2022 Computing All-vs-All MEMs in Run-Length-Encoded Collections of HiFi Reads
Diego Díaz-Domínguez, Simon J. Puglisi, Leena Salmela
SPIRE1
2021 A grammar compressor for collections of reads with applications to the construction of the BWT
abstract
We describe a grammar for DNA sequencing reads from which we can compute the BWT directly. Our motivation is to perform in succinct space genomic analyses that require complex string queries not yet supported by repetition-based self-indexes. Our approach is to store the set of reads as a grammar, but when required, compute its BWT to carry out the analysis by using self-indexes. Our experiments in real data showed that the space reduction we achieve with our compressor is competitive with LZ-based methods and better than entropy-based approaches. Compared to other popular grammars, in this kind of data, we achieve, on average, 12% extra compression and require less working space and time.
Diego Díaz-Domínguez, Gonzalo Navarro 0001
DCC1
2021 An LMS-Based Grammar Self-index with Local Consistency Properties
Diego Díaz-Domínguez, Gonzalo Navarro 0001, Alejandro Pacheco
SPIRE1
2019 An Index for Sequencing Reads Based on the Colored de Bruijn Graph
Diego Díaz-Domínguez
SPIRE1