Jeroen Bertels

dblp:235/3461 · DBLP profile ↗
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7ranked-venue papers
2as first author
5since 2021 · last 2023
0000-0001-7206-2671ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 7 · 2 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 1 first-author · 3 since 2021
YearPublicationVenuePosition
2023 Dice Semimetric Losses: Optimizing the Dice Score with Soft Labels
Zifu Wang, Teodora Popordanoska, Jeroen Bertels, Robin Lemmens, Matthew B. Blaschko
MICCAI (3)3
2023 USE-Evaluator: Performance metrics for medical image segmentation models supervised by uncertain, small or empty reference annotations in neuroimaging
Sophie Ostmeier, Brian Axelrod, Fabian Isensee, Jeroen Bertels, Michael Mlynash, Soren Christensen, Maarten G. Lansberg, Gregory W. Albers, Rajen Sheth, Benjamin F. J. Verhaaren, Abdelkader Mahammedi, Li-Jia Li 0001, Greg Zaharchuk, Jeremy J. Heit
Medical Image Anal.4
2022 The Dice Loss in the Context of Missing or Empty Labels: Introducing $\varPhi $ and ε
Sofie Tilborghs, Jeroen Bertels, David Robben, Dirk Vandermeulen, Frederik Maes
MICCAI (5)2
2021 On the Relationship Between Calibrated Predictors and Unbiased Volume Estimation
Teodora Popordanoska, Jeroen Bertels, Dirk Vandermeulen, Frederik Maes, Matthew B. Blaschko
MICCAI (1)2
2021 Theoretical analysis and experimental validation of volume bias of soft Dice optimized segmentation maps in the context of inherent uncertainty
Jeroen Bertels, David Robben, Dirk Vandermeulen, Paul Suetens
Medical Image Anal.1
2020 Optimization for Medical Image Segmentation: Theory and Practice When Evaluating With Dice Score or Jaccard Index
abstract
In many medical imaging and classical computer vision tasks, the Dice score and Jaccard index are used to evaluate the segmentation performance. Despite the existence and great empirical success of metric-sensitive losses, i.e. relaxations of these metrics such as soft Dice, soft Jaccard and Lovász-Softmax, many researchers still use per-pixel losses, such as (weighted) cross-entropy to train CNNs for segmentation. Therefore, the target metric is in many cases not directly optimized. We investigate from a theoretical perspective, the relation within the group of metric-sensitive loss functions and question the existence of an optimal weighting scheme for weighted cross-entropy to optimize the Dice score and Jaccard index at test time. We find that the Dice score and Jaccard index approximate each other relatively and absolutely, but we find no such approximation for a weighted Hamming similarity. For the Tversky loss, the approximation gets monotonically worse when deviating from the trivial weight setting where soft Tversky equals soft Dice. We verify these results empirically in an extensive validation on six medical segmentation tasks and can confirm that metric-sensitive losses are superior to cross-entropy based loss functions in case of evaluation with Dice Score or Jaccard Index. This further holds in a multi-class setting, and across different object sizes and foreground/background ratios. These results encourage a wider adoption of metric-sensitive loss functions for medical segmentation tasks where the performance measure of interest is the Dice score or Jaccard index.
Tom Eelbode, Jeroen Bertels, Maxim Berman, Dirk Vandermeulen, Frederik Maes, Raf Bisschops, Matthew B. Blaschko
IEEE Trans. Medical Imaging2
2019 Optimizing the Dice Score and Jaccard Index for Medical Image Segmentation: Theory and Practice
Jeroen Bertels, Tom Eelbode, Maxim Berman, Dirk Vandermeulen, Frederik Maes, Raf Bisschops, Matthew B. Blaschko
MICCAI (2)1