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Kyle Swanson

dblp:239/4007 · DBLP profile ↗
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6ranked-venue papers
2as first author
4since 2021 · last 2026
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 1 first-author · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 2 · 2 since 2021Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
3 papers
Trustworthy machine learning · 31% Generative modeling · 31% Information extraction and text analysis · 15%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 67% Medical and health informatics · 33%
Databases, data mining, and information retrieval
2 papers
Data integration and cleaning · 74% Information retrieval · 26%

Topics — the 12 heaviest of 13, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › drug discovery
ADMET prediction
0.812024
ADMET-AI: a machine learning ADMET platform for evaluation of large-scale chemical libraries · Bioinform. 2024
Bioinformatics and computational biology › drug discovery
computational drug discovery
0.812024
ADMET-AI: a machine learning ADMET platform for evaluation of large-scale chemical libraries · Bioinform. 2024
Data integration and cleaning
data curation
0.812024
UniTox: Leveraging LLMs to Curate a Unified Dataset of Drug-Induced Toxicity from FDA Labels · NeurIPS 2024
Machine learning › Trustworthy machine learning
interpretability
0.412020
Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport · ACL 2020
Machine learning › Generative modeling › molecular generation
molecular design
0.412020
Improving Molecular Design by Stochastic Iterative Target Augmentation · ICML 2020
Machine learning › Generative modeling
molecular generation
0.412020
Improving Molecular Design by Stochastic Iterative Target Augmentation · ICML 2020
Machine learning › Trustworthy machine learning › interpretability › rationalization
selective rationalization
0.412020
Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport · ACL 2020
Machine learning › Transfer learning and domain adaptation › domain adaptation › unsupervised domain adaptation
self-training
0.412020
Improving Molecular Design by Stochastic Iterative Target Augmentation · ICML 2020
Natural language and speech › Information extraction and text analysis
text matching
0.412020
Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport · ACL 2020
Knowledge, reasoning and agents › Knowledge representation and reasoning › knowledge acquisition › knowledge extraction
LLM-based information extraction
0.212024
UniTox: Leveraging LLMs to Curate a Unified Dataset of Drug-Induced Toxicity from FDA Labels · NeurIPS 2024
Information retrieval
retrieval models
0.112020
Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport · ACL 2020
Information retrieval
text matching
0.112020
Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport · ACL 2020

Methods — techniques the papers use, named apart from their topics

machine learning models · 2.3GPT-4o · 2.3sinkhorn algorithm · 0.9optimal transport · 0.9machine learning · 0.8graph neural network · 0.8stochastic EM · 0.4rejection sampling · 0.4property predictor · 0.4
YearPublicationVenuePosition
2026 NILO: Nested Iterative Optimization for Video Bitrate Ladder Construction
abstract
In video-on-demand services, each video title is deployed as a bitrate ladder—a set of pre-encoded representations with increasing bitrate and quality. This paper introduces NILO, a Nested and Iterative Ladder Optimization method for designing bitrate ladders in video streaming services. NILO balances the tradeoffs between user Quality of Experience (QoE) and Content Delivery Network (CDN) efficiency, while meeting the operational needs of large-scale production systems. Our contributions include a multi-objective optimization framework that captures QoE and CDN efficiency during ladder construction, and a novel method that uniquely integrates standard optimization components to address this complex problem. We evaluate NILO at a large video streamer using trace-driven simulations and an A/B test in production with over one million users. Our results show that NILO achieves significant efficiency gains while maintaining QoE comparable to highly tuned production ladders. Specifically, NILO reduces storage by approximately 20% and streaming rate by about 2%, with options for greater efficiency gains at the cost of modest QoE degradation.
Sagar Bharadwaj, Renata Teixeira, Kyle Swanson, Srinivasan Seshan
MMSys4
2024 UniTox: Leveraging LLMs to Curate a Unified Dataset of Drug-Induced Toxicity from FDA Labels
abstract
Drug-induced toxicity is one of the leading reasons new drugs fail clinical trials. Machine learning models that predict drug toxicity from molecular structure could help researchers prioritize less toxic drug candidates. However, current toxicity datasets are typically small and limited to a single organ system (e.g., cardio, renal, or liver). Creating these datasets often involved time-intensive expert curation by parsing drug labelling documents that can exceed 100 pages per drug. Here, we introduce UniTox, a unified dataset of 2,418 FDA-approved drugs with drug-induced toxicity summaries and ratings created by using GPT-4o to process FDA drug labels. UniTox spans eight types of toxicity: cardiotoxicity, liver toxicity, renal toxicity, pulmonary toxicity, hematological toxicity, dermatological toxicity, ototoxicity, and infertility. This is, to the best of our knowledge, the largest such systematic human in vivo database by number of drugs and toxicities, and the first covering nearly all non-combination FDA-approved medications for several of these toxicities. We recruited clinicians to validate a random sample of our GPT-4o annotated toxicities, and UniTox's toxicity ratings concord with clinician labelers 85-96\% of the time. Finally, we benchmark several machine learning models trained on UniTox to demonstrate the utility of this dataset for building molecular toxicity prediction models.
Jacob Silberg, Kyle Swanson, Elana Simon, Angela Zhang, Zaniar Ghazizadeh, Scott Ogden, Hisham Hamadeh, James Zou 0001
NeurIPS2
2024 ADMET-AI: a machine learning ADMET platform for evaluation of large-scale chemical libraries
abstract
MOTIVATION: The emergence of large chemical repositories and combinatorial chemical spaces, coupled with high-throughput docking and generative AI, have greatly expanded the chemical diversity of small molecules for drug discovery. Selecting compounds for experimental validation requires filtering these molecules based on favourable druglike properties, such as Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET). RESULTS: We developed ADMET-AI, a machine learning platform that provides fast and accurate ADMET predictions both as a website and as a Python package. ADMET-AI has the highest average rank on the TDC ADMET Leaderboard, and it is currently the fastest web-based ADMET predictor, with a 45% reduction in time compared to the next fastest public ADMET web server. ADMET-AI can also be run locally with predictions for one million molecules taking just 3.1 h. AVAILABILITY AND IMPLEMENTATION: The ADMET-AI platform is freely available both as a web server at admet.ai.greenstonebio.com and as an open-source Python package for local batch prediction at github.com/swansonk14/admet_ai (also archived on Zenodo at doi.org/10.5281/zenodo.10372930). All data and models are archived on Zenodo at doi.org/10.5281/zenodo.10372418.
Kyle Swanson, Parker Walther, Jeremy Leitz, Souhrid Mukherjee, Joseph C. Wu, Rabindra V. Shivnaraine, James Zou 0001
Bioinform.1
2021 VMAF-based Bitrate Ladder Estimation for Adaptive Streaming
abstract
In HTTP Adaptive Streaming, video content is conventionally encoded by adapting its spatial resolution and quantization level to best match the prevailing network state and display characteristics. It is well known that the traditional solution, of using a fixed bitrate ladder, does not result in the highest quality of experience for the user. Hence, in this paper, we introduce a content-driven approach for estimating the bitrate ladder, based on spatio-temporal features extracted from the uncompressed content. The method implements a content-driven interpolation. It uses the extracted features to train a machine learning model to infer the curvature points of the Rate-VMAF curves in order to guide a set of initial encodings. We employ the VMAF quality metric as a means of perceptually conditioning the estimation. When compared to the generation of a reference ladder using exhaustive encoding, 76.63% the estimated ladder's Rate-VMAF points are identical to those of the reference ladder. The proposed method benefits from a significant (77.4%) reduction in the number of encodes required with only a small (1.04%) average Bj⊘ntegaard Delta Rate increase.
Angeliki V. Katsenou, Fan Zhang 0017, Kyle Swanson, Mariana Afonso, Joel Sole, David Bull 0001
PCS3
2020 Rationalizing Text Matching: Learning Sparse Alignments via Optimal Transport
abstract
Selecting input features of top relevance has become a popular method for building selfexplaining models.In this work, we extend this selective rationalization approach to text matching, where the goal is to jointly select and align text pieces, such as tokens or sentences, as a justification for the downstream prediction.Our approach employs optimal transport (OT) to find a minimal cost alignment between the inputs.However, directly applying OT often produces dense and therefore uninterpretable alignments.To overcome this limitation, we introduce novel constrained variants of the OT problem that result in highly sparse alignments with controllable sparsity.Our model is end-to-end differentiable using the Sinkhorn algorithm for OT and can be trained without any alignment annotations.We evaluate our model on the Stack-Exchange, MultiNews, e-SNLI, and MultiRC datasets.Our model achieves very sparse rationale selections with high fidelity while preserving prediction accuracy compared to strong attention baseline models.† * Denotes equal contribution.† Our code is publicly available at https://github. com/asappresearch/rationale-alignment.Can I find duplicate songs with different names?I have so many duplicate songs but they have different names.Is there an application I can use to find and delete the duplicates?How to find (and delete) duplicate files?I have a largish music collection and there are some duplicates in there.Is there any way to find duplicate files.At a minimum by doing a hash and seeing if two files have the same hash.… I'm happy using the command line if that is the easiest way.
Kyle Swanson, Lili Yu, Tao Lei 0001
ACL1
2020 Improving Molecular Design by Stochastic Iterative Target Augmentation
abstract
Generative models in molecular design tend to be richly parameterized, data-hungry neural models, as they must create complex structured objects as outputs. Estimating such models from data may be challenging due to the lack of sufficient training data. In this paper, we propose a surprisingly effective self-training approach for iteratively creating additional molecular targets. We first pre-train the generative model together with a simple property predictor. The property predictor is then used as a likelihood model for filtering candidate structures from the generative model. Additional targets are iteratively produced and used in the course of stochastic EM iterations to maximize the log-likelihood that the candidate structures are accepted. A simple rejection (re-weighting) sampler suffices to draw posterior samples since the generative model is already reasonable after pre-training. We demonstrate significant gains over strong baselines for both unconditional and conditional molecular design. In particular, our approach outperforms the previous state-of-the-art in conditional molecular design by over 10% in absolute gain. Finally, we show that our approach is useful in other domains as well, such as program synthesis.
Kevin Yang, Wengong Jin, Kyle Swanson, Regina Barzilay, Tommi S. Jaakkola
ICML3