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Angelika Börsch-Haubold

dblp:242/6086 · DBLP profile ↗
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2ranked-venue papers
0as first author
1since 2021 · last 2021
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
comparative genomics
0.412019
High-complexity regions in mammalian genomes are enriched for developmental genes · Bioinform. 2019
Bioinformatics and computational biology › sequence analysis
sequence complexity analysis
0.412019
High-complexity regions in mammalian genomes are enriched for developmental genes · Bioinform. 2019
Bioinformatics and computational biology
functional genomics
0.112019
High-complexity regions in mammalian genomes are enriched for developmental genes · Bioinform. 2019
Bioinformatics and computational biology › functional genomics › functional enrichment analysis
gene set enrichment analysis
0.112019
High-complexity regions in mammalian genomes are enriched for developmental genes · Bioinform. 2019

Methods — techniques the papers use, named apart from their topics

match complexity · 0.4lempel-ziv complexity · 0.4
YearPublicationVenuePosition
2021 High-complexity regions in mammalian genomes are enriched for developmental genes
abstract
Bioinformatics (2019) doi:http://dx.doi.org/10.1093/bioinformatics/bty922 In the originally published version of this manuscript, there was an error in the ‘Availability and implementation’ section of the Abstract. The URL for the browser tracks should be: guanine.evolbio.mpg.de/complexity This detail has been corrected only in this corrigendum to preserve the published version of record.
Anton Pirogov, Peter Pfaffelhuber, Angelika Börsch-Haubold, Bernhard Haubold
Bioinform.3
2019 High-complexity regions in mammalian genomes are enriched for developmental genes
abstract
MOTIVATION: Unique sequence regions are associated with genetic function in vertebrate genomes. However, measuring uniqueness, or absence of long repeats, along a genome is conceptually and computationally difficult. Here we use a variant of the Lempel-Ziv complexity, the match complexity, Cm, and augment it by deriving its null distribution for random sequences. We then apply Cm to the human and mouse genomes to investigate the relationship between sequence complexity and function. RESULTS: We implemented Cm in the program macle and show through simulation that the newly derived null distribution of Cm is accurate. This allows us to delineate high-complexity regions in the human and mouse genomes. Using our program macle2go, we find that these regions are twofold enriched for genes. Moreover, the genes contained in these regions are more than 10-fold enriched for developmental functions. AVAILABILITY AND IMPLEMENTATION: Source code for macle and macle2go is available from www.github.com/evolbioinf/macle and www.github.com/evolbioinf/macle2go, respectively; Cm browser tracks from guanine.evolbio.mgp.de/complexity. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Anton Pirogov, Peter Pfaffelhuber, Angelika Börsch-Haubold, Bernhard Haubold
Bioinform.3