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Jacob D. Davis

dblp:243/3638 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2019
0000-0002-9612-300XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › network bioinformatics › biological network analysis › molecular network analysis
biochemical network analysis
0.412019
Metrics for regulated biochemical pathway systems · Bioinform. 2019

Methods — techniques the papers use, named apart from their topics

graph theory · 0.4
YearPublicationVenuePosition
2019 Metrics for regulated biochemical pathway systems
abstract
MOTIVATION: The assessment of graphs through crisp numerical metrics has long been a hallmark of biological network analysis. However, typical graph metrics ignore regulatory signals that are crucially important for optimal pathway operation, for instance, in biochemical or metabolic studies. Here we introduce adjusted metrics that are applicable to both static networks and dynamic systems. RESULTS: The metrics permit quantitative characterizations of the importance of regulation in biochemical pathway systems, including systems designed for applications in synthetic biology or metabolic engineering. They may also become criteria for effective model reduction. AVAILABILITY AND IMPLEMENTATION: The source code is available at https://gitlab.com/tienbien44/metrics-bsa.
Jacob D. Davis, Eberhard O. Voit
Bioinform.1