As a classical NP-hard problem and the topic of the PACE 2022 competition, the directed feedback vertex set problem (DFVSP) aims to find a minimum subset of vertices such that, when vertices in the subset and all their adjacent edges are removed from the directed graph, the remainder graph is acyclic. In this paper, we propose a threshold-based responsive simulated annealing algorithm called TRSA for solving DFVSP. First, we simplify the problem instances with two new reduction rules proposed in this paper and eight reduction rules from the literature. Then, based on a new solution representation, TRSA solves DFVSP with a fast local search procedure featured by a swap-based neighborhood structure and three neighborhood acceleration strategies. Finally, all these strategies are incorporated into a threshold-based responsive simulated annealing framework. Computational experiments on 140 benchmark instances show that TRSA is highly competitive compared to the state-of-the-art methods. Specifically, TRSA can improve the best known results for 53 instances, while matching the best known results for 79 ones. Furthermore, some important features of TRSA are analyzed to identify its success factors.

Non-negative Matrix Factorization (NMF) asks to decompose a (entry-wise) non-negative matrix into the product of two smaller-sized nonnegative matrices, which has been shown intractable in general. In order to overcome this issue, separability assumption is introduced which assumes all data points are in a conical hull. This assumption makes NMF tractable and widely used in text analysis and image processing, but still impractical for huge-scale datasets. In this paper, inspired by recent development on dequantizing techniques, we propose a new classical algorithm for separable NMF problem. Our new algorithm runs in polynomial time in the rank and logarithmic in the size of input matrices, which achieves an exponential speedup in the low-rank setting.