Olga V. Patterson

dblp:25/4181 · DBLP profile ↗
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35ranked-venue papers
8as first author
9since 2021 · last 2023
0000-0002-8717-5975ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 34 · 8 first-author · 9 since 2021Human-computer interaction and ubiquitous computing · 1
YearPublicationVenuePosition
2023 Representing and utilizing clinical textual data for real world studies: An OHDSI approach
Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng 0002, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang 0028, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu 0001
J. Biomed. Informatics10
2022 From Rules to Machine Learning: Upgrading Aging Clinical NLP Systems
Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA3
2022 Identifying Menopausal Status with Natural Language Processing
Hannah Eyre, Kristine W. Lynch, Carolyn Gibson, Scott L. DuVall, Olga V. Patterson
AMIA5
2022 Comprehensive Mapping of Presenting Symptoms in the Emergency Department and Inpatient Setting
Christopher R. Wilson, Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA5
2021 Challenges of comprehensive automatic coding of presenting complaints
Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson
AMIA4
2021 Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs
Mike Conway, Patrick R. Alba, Shu-Hong Zhu, Olga V. Patterson
AMIA4
2021 Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
AMIA9
2021 From Emergency Department to Admission: mapping reasons for visit and admit diagnosis using Natural Language Processing
Olga V. Patterson, Hannah Eyre, Kelly S. Peterson, Scott L. DuVall
AMIA1
2021 Extracting social determinants of health from electronic health records using natural language processing: a systematic review
abstract
OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcomes. Despite increased interest in capturing SDoH in electronic health records (EHRs), such information is typically locked in unstructured clinical notes. Natural language processing (NLP) is the key technology to extract SDoH information from clinical text and expand its utility in patient care and research. This article presents a systematic review of the state-of-the-art NLP approaches and tools that focus on identifying and extracting SDoH data from unstructured clinical text in EHRs. MATERIALS AND METHODS: A broad literature search was conducted in February 2021 using 3 scholarly databases (ACL Anthology, PubMed, and Scopus) following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A total of 6402 publications were initially identified, and after applying the study inclusion criteria, 82 publications were selected for the final review. RESULTS: Smoking status (n = 27), substance use (n = 21), homelessness (n = 20), and alcohol use (n = 15) are the most frequently studied SDoH categories. Homelessness (n = 7) and other less-studied SDoH (eg, education, financial problems, social isolation and support, family problems) are mostly identified using rule-based approaches. In contrast, machine learning approaches are popular for identifying smoking status (n = 13), substance use (n = 9), and alcohol use (n = 9). CONCLUSION: NLP offers significant potential to extract SDoH data from narrative clinical notes, which in turn can aid in the development of screening tools, risk prediction models, and clinical decision support systems.
Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu 0001, Xi Yang 0015, Jiang Bian 0001, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
J. Am. Medical Informatics Assoc.5
2020 A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020)
Patrick R. Alba, Olga V. Patterson, Mike Conway
AMIA2
2020 Removing barriers to clinical text processing with MedSpaCy
Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
AMIA2
2020 Linking Polyps to Jars: information loss across colonoscopy and pathology reports
Olga V. Patterson, Samir Gupta, Andrew Gawron, Tonya Kaltenbach, Ranier Bustamante, Daniel W. Denhalter, Ashley Earles, Scott L. DuVall
AMIA1
2018 Ankle Brachial Index Extraction System
Patrick R. Alba, Scott L. DuVall, Daniel Norvell, Kathryn P. Moore, Joseph M. Czerniecki, Olga V. Patterson
AMIA6
2018 A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT
Alec B. Chapman, Patrick R. Alba, Brian T. Bucher, Scott L. DuVall, Olga V. Patterson
AMIA5
2018 Natural Language Processing at Scale - Perspectives from Five Healthcare Organizations
Rebecca S. Jacobson, Wendy W. Chapman, Olga V. Patterson, Daniel Zisook
AMIA4
2018 Towards intuitive NLP: Interactive system for machine teaching
Olga V. Patterson, Lalindra De Silva, Brad Adams, Ryan Cornia, Thomas Ginter, Susan L. Zickmund, Scott L. DuVall
AMIA1
2018 Fast and Accurate Adverse Drug Event labeling without a GPU
Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson
AMIA5
2018 Flipping the Model for Biomedical Informatics Research
Brett R. South, Kristine W. Lynch, Michael E. Matheny, Julie A. Lynch, Olga Efimova, Catherine Chanfreau-Coffinier, Olga V. Patterson, Benjamin Viernes, Scott L. DuVall
AMIA7
2017 Pathology Information Extraction in Bladder Cancer Surveillance
Patrick R. Alba, Scott L. DuVall, Terri Elizabeth Workman, Florian Schroeck, Olga V. Patterson
AMIA5
2017 Improving the Quality of Clinical Data Extracted from Text
Daniel W. Denhalter, Olga V. Patterson, Brian D. Robison, Scott L. DuVall
AMIA2
2017 For the Common Good: Sharing Data Extracted from Text
Olga V. Patterson, Scott L. DuVall
AMIA1
2016 The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets
Patrick R. Alba, Olga V. Patterson, Benjamin Viernes, Daniel W. Denhalter, Nicole Bailey, Aaron W. C. Kamauu, Scott L. DuVall
AMIA2
2016 Large Scale Clinical Text Processing and Process Optimization
Scott L. DuVall, Patrick R. Alba, Olga V. Patterson
AMIA3
2016 VIP: A Framework for Mining Clinical Concepts Using Knowledge Author Ontologies and Apache UIMA
Thomas Ginter, Lalindra De Silva, Olga V. Patterson, William Scuba, Wendy W. Chapman, Scott L. DuVall
AMIA3
2016 An Introduction to Natural Language Processing Methods in Clinical Research
Olga V. Patterson, Patrick R. Alba, Scott L. DuVall
AMIA1
2016 Evaluation of UMLS Term Coverage for Echocardiogram Measures
Olga V. Patterson, Matthew Freiberg, Cynthia Brandt, Scott L. DuVall
AMIA1
2016 Automatic Extraction of Maximum and Recommended Drug Dosage Information from DailyMed Database
Lalindra De Silva, Olga V. Patterson, Scott L. DuVall
AMIA2
2015 Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping
Patrick R. Alba, Scott L. DuVall, Joanne LaFleur, Adam Bress, Olga V. Patterson
AMIA5
2015 Building custom lexicon for a large number of related concepts using templates
Olga V. Patterson, Matthew Freiberg, Scott L. DuVall
AMIA1
2014 Rapid NLP Development with Leo
Ryan Cornia, Olga V. Patterson, Thomas Ginter, Scott L. DuVall
AMIA2
2014 Check it with Chex: A Validation Tool for Iterative NLP Development
Scott L. DuVall, Ryan Cornia, Tyler Forbush, Corinne Halls, Olga V. Patterson
AMIA5
2014 Machine Learning Made Easy with Sherlock
Thomas Ginter, Olga V. Patterson, Ryan Cornia, Scott L. DuVall
AMIA2
2014 Automatic Engine for Mapping Mycobacteriology Reports to SNOMED-CT
Olga V. Patterson, Scott D. Nelson, Makoto Jones, Kimberly Findley, Kevin L. Winthrop, Kevin P. Fennelly, Scott L. DuVall
AMIA1
2012 JMX Analysis Module: Multi-thread aggregate NLP performance monitoring
Ryan Cornia, Olga V. Patterson, Scott L. DuVall
AMIA2
2007 Looking at human-computer interface design: Effects of ethnicity in computer agents
abstract
This paper presents empirical research findings that identify demonstrated attitude changes in computer users associated with their receiving advice from personified computer agents of two different ethnicities: African American and European American. Our findings indicate that computer users are more likely to change their actions (demonstrating underlying attitudes) based on input from a computer agent whose ethnicity is similar to theirs. These findings directly impact computer agent design in many fields.
Jean A. Pratt, Karina Hauser, Zsolt Ugray, Olga V. Patterson
Interact. Comput.4