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Bernal Jimenez Gutierrez

dblp:264/4620 · also Bernal Jiménez Gutiérrez · DBLP profile ↗
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6ranked-venue papers
2as first author
4since 2021 · last 2025
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 5 · 2 first-author · 4 since 2021Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Databases, data mining, and information retrieval
4 papers
Information retrieval · 91% Graph data management · 7% Knowledge graphs · 2%
Artificial intelligence
5 papers
Language models and text generation · 80% Question answering and dialogue systems · 13% Trustworthy machine learning · 8%

Topics — the 18 heaviest of 20, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Information retrieval
retrieval-augmented generation
1.622025
From RAG to Memory: Non-Parametric Continual Learning for Large Language Models · ICML 2025
HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models · NeurIPS 2024
Natural language and speech › Language models and text generation
LLM agents
0.912025
Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge · NeurIPS 2025
Natural language and speech › Language models and text generation
retrieval-augmented generation
0.912025
From RAG to Memory: Non-Parametric Continual Learning for Large Language Models · ICML 2025
Information retrieval
agentic search
0.912025
Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge · NeurIPS 2025
Information retrieval
ranking
0.912025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Information retrieval
reranking
0.912025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Information retrieval
retrieval evaluation
0.912025
Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge · NeurIPS 2025
Information retrieval
retrieval models
0.912025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Information retrieval
search engines
0.912025
Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge · NeurIPS 2025
Information retrieval
web search
0.912025
Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge · NeurIPS 2025
Information retrieval › reranking
zero-shot re-ranking
0.912025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Information retrieval › retrieval models
graph-based retrieval
0.812024
HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models · NeurIPS 2024
Information retrieval › question answering
multi-hop question answering
0.812024
HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models · NeurIPS 2024
Graph data management
personalized pagerank
0.812024
HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models · NeurIPS 2024
Medical and health informatics
clinical text processing
0.412020
Clinical Reading Comprehension: A Thorough Analysis of the emrQA Dataset · ACL 2020
Machine learning › Trustworthy machine learning › language model interpretability
attention patterns
0.312025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Natural language and speech › Language models and text generation
large language model
0.312025
Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers · ICLR 2025
Knowledge graphs
knowledge graph construction
0.312025
From RAG to Memory: Non-Parametric Continual Learning for Large Language Models · ICML 2025

Methods — techniques the papers use, named apart from their topics

large language model · 3.5personalized pagerank · 3.3vector retrieval · 1.7tree-structured rubric design · 1.7calibration · 1.7attention mechanism · 1.7LLM-as-a-judge · 1.7hippocampal indexing theory · 1.5
YearPublicationVenuePosition
2025 Attention in Large Language Models Yields Efficient Zero-Shot Re-Rankers
abstract
Information retrieval (IR) systems have played a vital role in modern digital life and have cemented their continued usefulness in this new era of generative AI via retrieval-augmented generation. With strong language processing capabilities and remarkable versatility, large language models (LLMs) have become popular choices for zero-shot re-ranking in IR systems. So far, LLM-based re-ranking methods rely on strong generative capabilities, which restricts their use to either specialized or powerful proprietary models. Given these restrictions, we ask: is autoregressive generation necessary and optimal for LLMs to perform re-ranking? We hypothesize that there are abundant signals relevant to re-ranking within LLMs that might not be used to their full potential via generation. To more directly leverage such signals, we propose in-context re-ranking (ICR), a novel method that leverages the change in attention pattern caused by the search query for accurate and efficient re-ranking. We assume that more relevant documents should receive more attention weights when an LLM is processing the query tokens, and leverage such signals for re-ranking. To mitigate the intrinsic biases in LLMs, we propose a calibration method using a content-free query. Due to the absence of generation, ICR only requires two ($O(1)$) forward passes to re-rank $N$ documents, making it substantially more efficient than generative re-ranking methods that require at least $O(N)$ forward passes. Our novel design also enables ICR to be applied to any LLM without specialized training while guaranteeing a well-formed ranking. Extensive experiments with two popular open-weight LLMs on standard single-hop and multi-hop information retrieval benchmarks show that ICR outperforms RankGPT while cutting the latency by more than 60% in practice. Through detailed analyses, we show that ICR's performance is specially strong on tasks that require more complex re-ranking signals, such as handling contextualization and contradiction between the query and passages, as well as information integration across multiple passages. Our findings call for further exploration on novel ways of utilizing open-weight LLMs beyond text generation.
Bernal Jimenez Gutierrez, Yu Su 0001
ICLR2
2025 From RAG to Memory: Non-Parametric Continual Learning for Large Language Models
abstract
Our ability to continuously acquire, organize, and leverage knowledge is a key feature of human intelligence that AI systems must approximate to unlock their full potential. Given the challenges in continual learning with large language models (LLMs), retrieval-augmented generation (RAG) has become the dominant way to introduce new information. However, its reliance on vector retrieval hinders its ability to mimic the dynamic and interconnected nature of human long-term memory. Recent RAG approaches augment vector embeddings with various structures like knowledge graphs to address some of these gaps, namely sense-making and associativity. However, their performance on more basic factual memory tasks drops considerably below standard RAG. We address this unintended deterioration and propose HippoRAG 2, a framework that outperforms standard RAG comprehensively on factual, sense-making, and associative memory tasks. HippoRAG 2 builds upon the Personalized PageRank algorithm used in HippoRAG and enhances it with deeper passage integration and more effective online use of an LLM. This combination pushes this RAG system closer to the effectiveness of human long-term memory, achieving a 7% improvement in associative memory tasks over the state-of-the-art embedding model while also exhibiting superior factual knowledge and sense-making memory capabilities. This work paves the way for non-parametric continual learning for LLMs. Code and data are available at https://github.com/OSU-NLP-Group/HippoRAG.
Bernal Jimenez Gutierrez, Yiheng Shu, Weijian Qi, Sizhe Zhou, Yu Su 0001
ICML1
2025 Mind2Web 2: Evaluating Agentic Search with Agent-as-a-Judge
abstract
Agentic search such as Deep Research systems-where agents autonomously browse the web, synthesize information, and return comprehensive citation-backed answers-represents a major shift in how users interact with web-scale information. While promising greater efficiency and cognitive offloading, the growing complexity and open-endedness of agentic search have outpaced existing evaluation benchmarks and methodologies, which largely assume short search horizons and static answers. In this paper, we introduce Mind2Web 2, a benchmark of 130 realistic, high-quality, and long-horizon tasks that require real-time web browsing and extensive information synthesis, constructed with over 1000 hours of human labor. To address the challenge of evaluating time-varying and complex answers, we propose a novel Agent-as-a-Judge framework. Our method constructs task-specific judge agents based on a tree-structured rubric design to automatically assess both answer correctness and source attribution. We conduct a comprehensive evaluation of ten frontier agentic search systems and human performance, along with a detailed error analysis to draw insights for future development. The best-performing system, OpenAI Deep Research, can already achieve 50-70% of human performance while spending half the time, highlighting its great potential. Altogether, Mind2Web 2 provides a rigorous foundation for developing and benchmarking the next generation of agentic search systems.
Boyu Gou, Zanming Huang, Yuting Ning, Yu Gu 0016, Michael Lin, Weijian Qi, Andrei Kopanev, Botao Yu, Bernal Jimenez Gutierrez, Yiheng Shu, Chan Hee Song, Jiaman Wu, Hanane Nour Moussa, Tianshu Zhang 0001, Yifei Li 0005, Tianci Xue, Zeyi Liao, Kai Zhang 0033, Boyuan Zheng 0001, Zhaowei Cai, Viktor Rozgic, Morteza Ziyadi, Huan Sun 0001, Yu Su 0001
NeurIPS9
2024 HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models
abstract
In order to thrive in hostile and ever-changing natural environments, mammalian brains evolved to store large amounts of knowledge about the world and continually integrate new information while avoiding catastrophic forgetting. Despite the impressive accomplishments, large language models (LLMs), even with retrieval-augmented generation (RAG), still struggle to efficiently and effectively integrate a large amount of new experiences after pre-training. In this work, we introduce HippoRAG, a novel retrieval framework inspired by the hippocampal indexing theory of human long-term memory to enable deeper and more efficient knowledge integration over new experiences. HippoRAG synergistically orchestrates LLMs, knowledge graphs, and the Personalized PageRank algorithm to mimic the different roles of neocortex and hippocampus in human memory. We compare HippoRAG with existing RAG methods on multi-hop question answering (QA) and show that our method outperforms the state-of-the-art methods remarkably, by up to 20%. Single-step retrieval with HippoRAG achieves comparable or better performance than iterative retrieval like IRCoT while being 10-20 times cheaper and 6-13 times faster, and integrating HippoRAG into IRCoT brings further substantial gains. Finally, we show that our method can tackle new types of scenarios that are out of reach of existing methods.
Bernal Jimenez Gutierrez, Yiheng Shu, Yu Gu 0016, Michihiro Yasunaga, Yu Su 0001
NeurIPS1
2020 Clinical Reading Comprehension: A Thorough Analysis of the emrQA Dataset
abstract
Machine reading comprehension has made great progress in recent years owing to largescale annotated datasets.In the clinical domain, however, creating such datasets is quite difficult due to the domain expertise required for annotation.Recently, Pampari et al. (2018) tackled this issue by using expert-annotated question templates and existing i2b2 annotations to create emrQA, the first large-scale dataset for question answering (QA) based on clinical notes.In this paper, we provide an indepth analysis of this dataset and the clinical reading comprehension (CliniRC) task.From our qualitative analysis, we find that (i) emrQA answers are often incomplete, and (ii) emrQA questions are often answerable without using domain knowledge.From our quantitative experiments, surprising results include that (iii) using a small sampled subset (5%-20%), we can obtain roughly equal performance compared to the model trained on the entire dataset, (iv) this performance is close to human expert's performance, and (v) BERT models do not beat the best performing base model.Following our analysis of the emrQA, we further explore two desired aspects of CliniRC systems: the ability to utilize clinical domain knowledge and to generalize to unseen questions and contexts.We argue that both should be considered when creating future datasets.1
Xiang Yue, Bernal Jimenez Gutierrez, Huan Sun 0001
ACL2
2020 Clinical Phrase Mining with Language Models
abstract
A vast amount of vital clinical data is available within unstructured texts such as discharge summaries and procedure notes in Electronic Medical Records (EMRs). Automatically transforming such unstructured data into structured units is crucial for effective data analysis in the field of clinical informatics. Recognizing phrases that reveal important medical information in a concise and thorough manner is a fundamental step in this process. Existing systems that are built for opendomain texts are designed to detect mostly non-medical phrases, while tools designed specifically for extracting concepts from clinical texts are not scalable to large corpora and often leave out essential context surrounding those detected clinical concepts. We address these issues by proposing a framework, CliniPhrase, which adapts domain-specific deep neural network based language models (such as ClinicalBERT) to effectively and efficiently extract high-quality phrases from clinical documents with a limited amount of training data. Experimental results on the MIMIC-III dataset show that our method can outperform the current state-of-the-art techniques by up to 18% in terms of F1measure while being very efficient (up to 48 times faster).
Kaushik Mani, Xiang Yue, Bernal Jimenez Gutierrez, Yungui Huang, Simon M. Lin, Huan Sun 0001
BIBM3