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Joel Ye

dblp:270/0730 · DBLP profile ↗
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4ranked-venue papers
3as first author
4since 2021 · last 2025
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 4 · 3 first-author · 4 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
4 papers
Deep learning architectures and training · 28% Language models and text generation · 16% Transfer learning and domain adaptation · 14%
Interdisciplinary, comprehensive, and emerging computing
3 papers
Bioinformatics and computational biology · 66% Medical and health informatics · 34%

Topics — the 11 heaviest of 12, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › computational neuroscience
neural decoding
1.832025
A Generalist Intracortical Motor Decoder · NeurIPS 2025
Few-shot Algorithms for Consistent Neural Decoding (FALCON) Benchmark · NeurIPS 2024
Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity · NeurIPS 2023
Medical and health informatics
brain-computer interface
1.022024
Few-shot Algorithms for Consistent Neural Decoding (FALCON) Benchmark · NeurIPS 2024
Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity · NeurIPS 2023
Natural language and speech › Language models and text generation › neural language model
autoregressive transformer
0.912025
A Generalist Intracortical Motor Decoder · NeurIPS 2025
Machine learning › Deep learning architectures and training
foundation model
0.912025
A Generalist Intracortical Motor Decoder · NeurIPS 2025
Machine learning › Transfer learning and domain adaptation
few-shot learning
0.812024
Few-shot Algorithms for Consistent Neural Decoding (FALCON) Benchmark · NeurIPS 2024
Machine learning › Representation and self-supervised learning
pre-training
0.712023
Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity · NeurIPS 2023
Machine learning › Deep learning architectures and training
transformer
0.712023
Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity · NeurIPS 2023
Machine learning › Reinforcement learning
exploration
0.512021
Auxiliary Tasks and Exploration Enable ObjectGoal Navigation · ICCV 2021
Robotics › Robot navigation and mapping
object goal navigation
0.512021
Auxiliary Tasks and Exploration Enable ObjectGoal Navigation · ICCV 2021
Machine learning › Trustworthy machine learning › robustness
distribution shift
0.312025
A Generalist Intracortical Motor Decoder · NeurIPS 2025
Robotics › Robot navigation and mapping
embodied navigation
0.112021
Auxiliary Tasks and Exploration Enable ObjectGoal Navigation · ICCV 2021

Methods — techniques the papers use, named apart from their topics

pre-training · 1.7autoregressive transformer · 1.7zero-shot decoding · 1.5few-shot recalibration · 1.5spatio-temporal transformer · 1.3unsupervised pretraining · 0.7unsupervised pre-training · 0.7recurrent neural network · 0.5exploration reward · 0.5auxiliary tasks · 0.5
YearPublicationVenuePosition
2025 A Generalist Intracortical Motor Decoder
abstract
Mapping the relationship between neural activity and motor behavior is a central aim of sensorimotor neuroscience and neurotechnology. While most progress to this end has relied on restricting complexity, the advent of foundation models instead proposes integrating a breadth of data as an alternate avenue for broadly advancing downstream modeling. We quantify this premise for motor decoding from intracortical microelectrode data, pretraining an autoregressive Transformer on 2000 hours of neural population spiking activity paired with diverse motor covariates from over 30 monkeys and humans. The resulting model is broadly useful, benefiting decoding on 8 downstream decoding tasks and generalizing to a variety of neural distribution shifts. However, we also highlight that scaling autoregressive Transformers seems unlikely to resolve limitations stemming from sensor variability and output stereotypy in neural datasets.
Joel Ye, Fabio Rizzoglio, Adam Smoulder, Hongwei Mao, Gary Blumenthal, William Hockeimer, Nicolas Kunigk, Dalton Moore, Patrick Marino, Raeed H. Chowdhury, J. Patrick Mayo, Aaron P. Batista, Steven M. Chase, Michael L. Boninger, Charles Greenspon, Andrew B. Schwartz, Nicholas Hatsopoulos, Lee E. Miller, Kristofer E. Bouchard, Jennifer L. Collinger, Leila Wehbe, Robert A. Gaunt
NeurIPS1
2024 Few-shot Algorithms for Consistent Neural Decoding (FALCON) Benchmark
abstract
Intracortical brain-computer interfaces (iBCIs) can restore movement and communication abilities to individuals with paralysis by decoding their intended behavior from neural activity recorded with an implanted device. While this activity yields high-performance decoding over short timescales, neural data is often nonstationary, which can lead to decoder failure if not accounted for. To maintain performance, users must frequently recalibrate decoders, which requires the arduous collection of new neural and behavioral data. Aiming to reduce this burden, several approaches have been developed that either limit recalibration data requirements (few-shot approaches) or eliminate explicit recalibration entirely (zero-shot approaches). However, progress is limited by a lack of standardized datasets and comparison metrics, causing methods to be compared in an ad hoc manner. Here we introduce the FALCON benchmark suite (Few-shot Algorithms for COnsistent Neural decoding) to standardize evaluation of iBCI robustness. FALCON curates five datasets of neural and behavioral data that span movement and communication tasks to focus on behaviors of interest to modern-day iBCIs. Each dataset includes calibration data, optional few-shot recalibration data, and private evaluation data. We implement a flexible evaluation platform which only requires user-submitted code to return behavioral predictions on unseen data. We also seed the benchmark by applying baseline methods spanning several classes of possible approaches. FALCON aims to provide rigorous selection criteria for robust iBCI decoders, easing their translation to real-world devices. https://snel-repo.github.io/falcon/
Brianna Karpowicz, Joel Ye, Chaofei Fan, Pablo Tostado-Marcos, Fabio Rizzoglio, Clay Washington, Thiago Scodeler, Diogo de Lucena, Samuel Nason, Matthew Mender, Ezequiel M. Arneodo, Leigh R. Hochberg, Cynthia A. Chestek, Jaimie M. Henderson, Timothy Gentner, Vikash Gilja, Lee E. Miller, Adam Rouse, Robert A. Gaunt, Jennifer L. Collinger, Chethan Pandarinath
NeurIPS2
2023 Neural Data Transformer 2: Multi-context Pretraining for Neural Spiking Activity
abstract
The neural population spiking activity recorded by intracortical brain-computer interfaces (iBCIs) contain rich structure. Current models of such spiking activity are largely prepared for individual experimental contexts, restricting data volume to that collectable within a single session and limiting the effectiveness of deep neural networks (DNNs). The purported challenge in aggregating neural spiking data is the pervasiveness of context-dependent shifts in the neural data distributions. However, large scale unsupervised pretraining by nature spans heterogeneous data, and has proven to be a fundamental recipe for successful representation learning across deep learning. We thus develop Neural Data Transformer 2 (NDT2), a spatiotemporal Transformer for neural spiking activity, and demonstrate that pretraining can leverage motor BCI datasets that span sessions, subjects, and experimental tasks. NDT2 enables rapid adaptation to novel contexts in downstream decoding tasks and opens the path to deployment of pretrained DNNs for iBCI control. Code: https://github.com/joel99/context_general_bci
Joel Ye, Jennifer L. Collinger, Leila Wehbe, Robert A. Gaunt
NeurIPS1
2021 Auxiliary Tasks and Exploration Enable ObjectGoal Navigation
abstract
ObjectGoal Navigation (ObjectNav) is an embodied task wherein agents are to navigate to an object instance in an unseen environment. Prior works have shown that end-to-end ObjectNav agents that use vanilla visual and recurrent modules, e.g. a CNN+RNN, perform poorly due to overfitting and sample inefficiency. This has motivated current state-of-the-art methods to mix analytic and learned components and operate on explicit spatial maps of the environment. We instead re-enable a generic learned agent by adding auxiliary learning tasks and an exploration reward. Our agents achieve 24.5% success and 8.1% SPL, a 37% and 8% relative improvement over prior state-of-the-art, respectively, on the Habitat ObjectNav Challenge [35]. From our analysis, we propose that agents will act to simplify their visual inputs so as to smooth their RNN dynamics, and that auxiliary tasks reduce overfitting by minimizing effective RNN dimensionality; i.e. a performant ObjectNav agent that must maintain coherent plans over long horizons does so by learning smooth, low-dimensional recurrent dynamics. Site: joel99.github.io/objectnav/
Joel Ye, Dhruv Batra, Abhishek Das 0002, Erik Wijmans
ICCV1