Pietro Mascagni

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15ranked-venue papers
0as first author
14since 2021 · last 2025
0000-0001-7288-3023ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 14 · 13 since 2021Graphics, computer vision, multimedia, augmented reality and games · 5 · 4 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
YearPublicationVenuePosition
2025 Multi-modal Representations for Fine-Grained Multi-Label Critical View of Safety Recognition
Britty Baby, Vinkle Srivastav, Pooja P. Jain, Kun Yuan 0004, Pietro Mascagni, Nicolas Padoy
MICCAI (11)5
2025 Learning from Sparse Point Labels for Dense Carcinosis Localization in Advanced Ovarian Cancer Assessment
Farahdiba Zarin, Riccardo Oliva, Vinkle Srivastav, Armine Vardazaryan, Andrea Rosati, Alice Zampolini Faustini, Giovanni Scambia, Anna Fagotti, Pietro Mascagni, Nicolas Padoy
MICCAI (11)9
2025 Learning multi-modal representations by watching hundreds of surgical video lectures
abstract
Recent advancements in surgical computer vision applications have been driven by vision-only models, which do not explicitly integrate the rich semantics of language into their design. These methods rely on manually annotated surgical videos to predict a fixed set of object categories, limiting their generalizability to unseen surgical procedures and downstream tasks. In this work, we put forward the idea that the surgical video lectures available through open surgical e-learning platforms can provide effective vision and language supervisory signals for multi-modal representation learning without relying on manual annotations. We address the surgery-specific linguistic challenges present in surgical video lectures by employing multiple complementary automatic speech recognition systems to generate text transcriptions. We then present a novel method, SurgVLP - Surgical Vision Language Pre-training, for multi-modal representation learning. SurgVLP constructs a new contrastive learning objective to align video clip embeddings with the corresponding multiple text embeddings by bringing them together within a joint latent space. To effectively demonstrate the representational capability of the learned joint latent space, we introduce several vision-and-language surgical tasks and evaluate various vision-only tasks specific to surgery, e.g., surgical tool, phase, and triplet recognition. Extensive experiments across diverse surgical procedures and tasks demonstrate that the multi-modal representations learned by SurgVLP exhibit strong transferability and adaptability in surgical video analysis. Furthermore, our zero-shot evaluations highlight SurgVLP's potential as a general-purpose foundation model for surgical workflow analysis, reducing the reliance on extensive manual annotations for downstream tasks, and facilitating adaptation methods such as few-shot learning to build a scalable and data-efficient solution for various downstream surgical applications. The code is available at https://github.com/CAMMA-public/SurgVLP.
Kun Yuan 0004, Vinkle Srivastav, Tong Yu 0009, Joël L. Lavanchy, Jacques Marescaux, Pietro Mascagni, Nassir Navab, Nicolas Padoy
Medical Image Anal.6
2025 Surgical text-to-image generation
abstract
Acquiring surgical data for research and development is significantly hindered by high annotation costs and practical and ethical constraints. Synthetically generated images present a valuable alternative. In this work, we explore adapting text-to-image generative models for the surgical domain using the CholecT50 dataset, which provides surgical images annotated with action triplets (instrument, verb, target). We investigate several language models and find T5 to offer more distinct features for differentiating surgical actions on triplet-based textual inputs, and showcasing stronger alignment between long and triplet-based captions. To address challenges in training text-to-image models solely on triplet-based captions without additional input signals, we discover that triplet text embeddings are instrument-centric in the latent space. Leveraging this insight, we design an instrument-based class balancing technique to counteract data imbalance and skewness, improving training convergence. Extending Imagen, a diffusion-based generative model, we develop Surgical Imagen to generate photorealistic and activity-aligned surgical images from triplet-based textual prompts. We assess the model on quality, alignment, reasoning, and knowledge, achieving FID and CLIP scores of 3.7 and 26.8% respectively. Human expert survey shows that participants were highly challenged by the realistic characteristics of the generated samples, demonstrating Surgical Imagen’s effectiveness as a practical alternative to real data collection. • Present Surgical Imagen for photorealistic surgical images from text. • Utilize triplet-based labels (instrument verb target) for accurate image generation. • Investigate various language models; T5 proves best for triplet alignment. • Introduce instrument-based class balancing to address dataset imbalances. • Validate model effectiveness through expert surveys and automated metrics.
Chinedu Innocent Nwoye, Rupak Bose, Kareem Elgohary, Lorenzo Arboit, Giorgio Carlino, Joël L. Lavanchy, Pietro Mascagni, Nicolas Padoy
Pattern Recognit. Lett.7
2024 Jumpstarting Surgical Computer Vision
Deepak Alapatt, Aditya Murali, Vinkle Srivastav, Pietro Mascagni, Nicolas Padoy
MICCAI (6)4
2024 Latent Graph Representations for Critical View of Safety Assessment
abstract
Assessing the critical view of safety in laparoscopic cholecystectomy requires accurate identification and localization of key anatomical structures, reasoning about their geometric relationships to one another, and determining the quality of their exposure. Prior works have approached this task by including semantic segmentation as an intermediate step, using predicted segmentation masks to then predict the CVS. While these methods are effective, they rely on extremely expensive ground-truth segmentation annotations and tend to fail when the predicted segmentation is incorrect, limiting generalization. In this work, we propose a method for CVS prediction wherein we first represent a surgical image using a disentangled latent scene graph, then process this representation using a graph neural network. Our graph representations explicitly encode semantic information - object location, class information, geometric relations - to improve anatomy-driven reasoning, as well as visual features to retain differentiability and thereby provide robustness to semantic errors. Finally, to address annotation cost, we propose to train our method using only bounding box annotations, incorporating an auxiliary image reconstruction objective to learn fine-grained object boundaries. We show that our method not only outperforms several baseline methods when trained with bounding box annotations, but also scales effectively when trained with segmentation masks, maintaining state-of-the-art performance.
Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
IEEE Trans. Medical Imaging3
2023 Encoding Surgical Videos as Latent Spatiotemporal Graphs for Object and Anatomy-Driven Reasoning
Aditya Murali, Deepak Alapatt, Pietro Mascagni, Armine Vardazaryan, Alain Garcia, Nariaki Okamoto, Didier Mutter, Nicolas Padoy
MICCAI (9)3
2023 CholecTriplet2021: A benchmark challenge for surgical action triplet recognition
Chinedu Innocent Nwoye, Deepak Alapatt, Tong Yu 0009, Armine Vardazaryan, Fangfang Xia, Tong Xia, Fucang Jia, Yuxuan Yang 0007, Hao Wang 0081, Derong Yu, Guoyan Zheng, Xiaotian Duan, Neil Getty, Ricardo Sanchez-Matilla, Maria Robu, Li Zhang 0040, Huabin Chen, Jiacheng Wang 0002, Liansheng Wang 0002, Beerend G. A. Gerats, Sista Raviteja, Rachana Sathish, Rong Tao, Satoshi Kondo, Winnie Pang, Hongliang Ren 0001, Julian Ronald Abbing, Mohammad Hasan Sarhan, Sebastian Bodenstedt, Nithya Bhasker, Bruno Oliveira 0002, Helena R. Torres, Finn Gaida, Tobias Czempiel, João L. Vilaça, Pedro Morais, Jaime C. Fonseca 0001, Ruby Mae Egging, Inge Nicole Wijma, Chen Qian 0006, Guibin Bian, Zhen Li 0026, Velmurugan Balasubramanian, Debdoot Sheet, Imanol Luengo, Yuanbo Zhu, Shuai Ding 0001, Jakob-Anton Aschenbrenner, Nicolas Elini van der Kar, Mengya Xu, Mobarakol Islam, Seenivasan Lalithkumar, Alexander Jenke, Danail Stoyanov, Didier Mutter, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Nicolas Padoy
Medical Image Anal.59
2023 CholecTriplet2022: Show me a tool and tell me the triplet - An endoscopic vision challenge for surgical action triplet detection
Chinedu Innocent Nwoye, Tong Yu 0009, Saurav Sharma, Aditya Murali, Deepak Alapatt, Armine Vardazaryan, Kun Yuan 0004, Jonas Hajek, Wolfgang Reiter, Amine Yamlahi, Finn-Henri Smidt, Xiaoyang Zou, Guoyan Zheng, Bruno Oliveira 0002, Helena R. Torres, Satoshi Kondo, Satoshi Kasai, Felix Holm, Ege Özsoy, Shuangchun Gui, Sista Raviteja, Rachana Sathish, Pranav Poudel, Binod Bhattarai, Ziheng Wang 0003, Guo Rui, Melanie Schellenberg, João L. Vilaça, Tobias Czempiel, Zhenkun Wang 0001, Debdoot Sheet, Shrawan Kumar Thapa, Max Berniker, Patrick Godau, Pedro Morais, Sudarshan Regmi, Thuy Nuong Tran, Jaime C. Fonseca 0001, Jan-Hinrich Nölke, Estevão Lima, Eduard Vazquez, Lena Maier-Hein, Nassir Navab, Pietro Mascagni, Barbara Seeliger, Cristians Gonzalez, Didier Mutter, Nicolas Padoy
Medical Image Anal.45
2023 Live laparoscopic video retrieval with compressed uncertainty
Tong Yu 0009, Pietro Mascagni, Juan Verde, Jacques Marescaux, Didier Mutter, Nicolas Padoy
Medical Image Anal.2
2023 Federated Cycling (FedCy): Semi-Supervised Federated Learning of Surgical Phases
abstract
Recent advancements in deep learning methods bring computer-assistance a step closer to fulfilling promises of safer surgical procedures. However, the generalizability of such methods is often dependent on training on diverse datasets from multiple medical institutions, which is a restrictive requirement considering the sensitive nature of medical data. Recently proposed collaborative learning methods such as Federated Learning (FL) allow for training on remote datasets without the need to explicitly share data. Even so, data annotation still represents a bottleneck, particularly in medicine and surgery where clinical expertise is often required. With these constraints in mind, we propose FedCy, a federated semi-supervised learning (FSSL) method that combines FL and self-supervised learning to exploit a decentralized dataset of both labeled and unlabeled videos, thereby improving performance on the task of surgical phase recognition. By leveraging temporal patterns in the labeled data, FedCy helps guide unsupervised training on unlabeled data towards learning task-specific features for phase recognition. We demonstrate significant performance gains over state-of-the-art FSSL methods on the task of automatic recognition of surgical phases using a newly collected multi-institutional dataset of laparoscopic cholecystectomy videos. Furthermore, we demonstrate that our approach also learns more generalizable features when tested on data from an unseen domain.
Hasan Kassem, Deepak Alapatt, Pietro Mascagni, Alexandros Karargyris, Nicolas Padoy
IEEE Trans. Medical Imaging3
2023 Weakly Supervised Temporal Convolutional Networks for Fine-Grained Surgical Activity Recognition
abstract
Automatic recognition of fine-grained surgical activities, called steps, is a challenging but crucial task for intelligent intra-operative computer assistance. The development of current vision-based activity recognition methods relies heavily on a high volume of manually annotated data. This data is difficult and time-consuming to generate and requires domain-specific knowledge. In this work, we propose to use coarser and easier-to-annotate activity labels, namely phases, as weak supervision to learn step recognition with fewer step annotated videos. We introduce a step-phase dependency loss to exploit the weak supervision signal. We then employ a Single-Stage Temporal Convolutional Network (SS-TCN) with a ResNet-50 backbone, trained in an end-to-end fashion from weakly annotated videos, for temporal activity segmentation and recognition. We extensively evaluate and show the effectiveness of the proposed method on a large video dataset consisting of 40 laparoscopic gastric bypass procedures and the public benchmark CATARACTS containing 50 cataract surgeries.
Sanat Ramesh, Diego Dall'Alba, Cristians Gonzalez, Tong Yu 0009, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Paolo Fiorini, Nicolas Padoy
IEEE Trans. Medical Imaging5
2022 Surgical data science - from concepts toward clinical translation
abstract
Recent developments in data science in general and machine learning in particular have transformed the way experts envision the future of surgery. Surgical Data Science (SDS) is a new research field that aims to improve the quality of interventional healthcare through the capture, organization, analysis and modeling of data. While an increasing number of data-driven approaches and clinical applications have been studied in the fields of radiological and clinical data science, translational success stories are still lacking in surgery. In this publication, we shed light on the underlying reasons and provide a roadmap for future advances in the field. Based on an international workshop involving leading researchers in the field of SDS, we review current practice, key achievements and initiatives as well as available standards and tools for a number of topics relevant to the field, namely (1) infrastructure for data acquisition, storage and access in the presence of regulatory constraints, (2) data annotation and sharing and (3) data analytics. We further complement this technical perspective with (4) a review of currently available SDS products and the translational progress from academia and (5) a roadmap for faster clinical translation and exploitation of the full potential of SDS, based on an international multi-round Delphi process.
Lena Maier-Hein, Matthias Eisenmann, Duygu Sarikaya, Keno März, Toby Collins, Anand Malpani, Johannes Fallert, Hubertus Feußner, Stamatia Giannarou, Pietro Mascagni, Hirenkumar Nakawala, Adrian Park 0001, Carla M. Pugh, Danail Stoyanov, S. Swaroop Vedula, Kevin Cleary, Gabor Fichtinger, Germain Forestier, Bernard Gibaud, Teodor P. Grantcharov, Makoto Hashizume, Doreen Heckmann-Nötzel, Hannes Kenngott, Ron Kikinis, Lars Mündermann, Nassir Navab, Sinan Onogur, Tobias Roß, Raphael Sznitman, Russell H. Taylor, Minu Tizabi, Martin Wagner 0001, Gregory D. Hager, Thomas Neumuth, Nicolas Padoy, Justin Collins, Ines Gockel, Jan Goedeke, Daniel A. Hashimoto, Luc Joyeux, Kyle Lam, Daniel Richard Leff, Amin Madani, Hani J. Marcus, Ozanan R. Meireles, Alexander Seitel, Dogu Teber, Frank Ückert, Beat P. Müller-Stich, Pierre Jannin, Stefanie Speidel
Medical Image Anal.10
2022 Rendezvous: Attention mechanisms for the recognition of surgical action triplets in endoscopic videos
Chinedu Innocent Nwoye, Tong Yu 0009, Cristians Gonzalez, Barbara Seeliger, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Nicolas Padoy
Medical Image Anal.5
2020 Recognition of Instrument-Tissue Interactions in Endoscopic Videos via Action Triplets
abstract
Recognition of surgical activity is an essential component to develop context-aware decision support for the operating room. In this work, we tackle the recognition of fine-grained activities, modeled as action triplets representing the tool activity. To this end, we introduce a new laparoscopic dataset, CholecT40, consisting of 40 videos from the public dataset Cholec80 in which all frames have been annotated using 128 triplet classes. Furthermore, we present an approach to recognize these triplets directly from the video data. It relies on a module called Class Activation Guide (CAG), which uses the instrument activation maps to guide the verb and target recognition. To model the recognition of multiple triplets in the same frame, we also propose a trainable 3D Interaction Space, which captures the associations between the triplet components. Finally, we demonstrate the significance of these contributions via several ablation studies and comparisons to baselines on CholecT40.
Chinedu Innocent Nwoye, Cristians Gonzalez, Tong Yu 0009, Pietro Mascagni, Didier Mutter, Jacques Marescaux, Nicolas Padoy
MICCAI (3)4