Nonlinear dimensionality reduction (NDR) techniques are widely used to visualize high-dimensional data. However, they often lack explainability, making it challenging for analysts to relate patterns in projections to original high-dimensional features. Existing interactive methods typically separate user interactions from the feature space, treating them primarily as post-hoc explanations rather than integrating them into the exploration process. This separation limits insight generation by restricting users' understanding of how features dynamically influence projections. To address this limitation, we propose a bidirectional interaction method that directly bridges the feature space and the projections. By allowing users to adjust feature weights, our approach enables intuitive exploration of how different features shape the embedding. We also define visual semantics to quantify projection changes, enabling structured pattern discovery through automated query-based interaction. To ensure responsiveness despite the computational complexity of NDR, we employ a neural network to approximate the projection process, enhancing scalability while maintaining accuracy. We evaluated our approach through quantitative analysis, assessing accuracy and scalability. A user study with a comprehensive visual interface and case studies demonstrated its effectiveness in supporting hypothesis generation and exploratory tasks with real-world data. The results confirmed that our approach supports diverse analytical scenarios and enhances users' ability to explore and interpret high-dimensional data through interactive exploration grounded in the feature space.

Brushing is a common interaction technique in 2D scatterplots, allowing users to select clustered points within a continuous, enclosed region for further analysis or filtering. However, applying conventional brushing to 2D representations of multidimensional (MD) data, i.e., Multidimensional Projections (MDPs), can lead to unreliable cluster analysis due to MDP-induced distortions that inaccurately represent the cluster structure of the original MD data. To alleviate this problem, we introduce a novel brushing technique for MDPs called Distortion-aware brushing. As users perform brushing, Distortion-aware brushing correct distortions around the currently brushed points by dynamically relocating points in the projection, pulling data points close to the brushed points in MD space while pushing distant ones apart. This dynamic adjustment helps users brush MD clusters more accurately, leading to more reliable cluster analysis. Our user studies with 24 participants show that Distortion-aware brushing significantly outperforms previous brushing techniques for MDPs in accurately separating clusters in the MD space and remains robust against distortions. We further demonstrate the effectiveness of our technique through two use cases: (1) conducting cluster analysis of geospatial data and (2) interactively labeling MD clusters.

Selecting the appropriate dimensionality reduction (DR) technique and determining its optimal hyperparameter settings that maximize the accuracy of the output projections typically involves extensive trial and error, often resulting in unnecessary computational overhead. To address this challenge, we propose a dataset-adaptive approach to DR optimization guided by structural complexity metrics. These metrics quantify the intrinsic complexity of a dataset, predicting whether higher-dimensional spaces are necessary to represent it accurately. Since complex datasets are often inaccurately represented in two-dimensional projections, leveraging these metrics enables us to predict the maximum achievable accuracy of DR techniques for a given dataset, eliminating redundant trials in optimizing DR. We introduce the design and theoretical foundations of these structural complexity metrics. We quantitatively verify that our metrics effectively approximate the ground truth complexity of datasets and confirm their suitability for guiding dataset-adaptive DR workflow. Finally, we empirically show that our dataset-adaptive workflow significantly enhances the efficiency of DR optimization without compromising accuracy.

Data visualizations can sometimes misrepresent the underlying data, leading to misleading interpretations. However, existing systems fail to precisely identify which parts of a visualization contribute to misleading interpretations, leaving users uncertain about the misalignments. To address this issue, we develop a pipeline that automatically identifies the misleading parts within a visualization. Given an image file, our pipeline first detects graphical components of the visualization, converting them into structured objects. We then apply an algorithm to pinpoint misleading objects and explain how they contribute to distortions in interpretation. Our user study confirms that our pipeline accurately identifies misleading visualization designs, outperforming previous baselines. We also find that our pipeline supports participants in developing revision strategies to improve misleading visualizations.

Clustering techniques are often validated using benchmark datasets where class labels are used as ground-truth clusters. However, depending on the datasets, class labels may not align with the actual data clusters, and such misalignment hampers accurate validation. Therefore, it is essential to evaluate and compare datasets regarding their cluster-label matching (CLM), i.e., how well their class labels match actual clusters. Internal validation measures (IVMs), like Silhouette, can compare CLM over different labeling of the same dataset, but are not designed to do so across different datasets. We thus introduce Adjusted IVMs as fast and reliable methods to evaluate and compare CLM across datasets. We establish four axioms that require validation measures to be independent of data properties not related to cluster structure (e.g., dimensionality, dataset size). Then, we develop standardized protocols to convert any IVM to satisfy these axioms, and use these protocols to adjust six widely used IVMs. Quantitative experiments (1) verify the necessity and effectiveness of our protocols and (2) show that adjusted IVMs outperform the competitors, including standard IVMs, in accurately evaluating CLM both within and across datasets. We also show that the datasets can be filtered or improved using our method to form more reliable benchmarks for clustering validation.

Dimensionality reduction is used as an important tool for unraveling the complexities of high-dimensional datasets in many fields of science, such as cell biology, chemical informatics, and physics. Visualizations of the dimensionally-reduced data enable scientists to delve into the intrinsic structures of their datasets and align them with established hypotheses. Visualization researchers have thus proposed many dimensionality reduction methods and interactive systems designed to uncover latent structures. At the same time, different scientific domains have formulated guidelines or common workflows for using dimensionality reduction techniques and visualizations for their respective fields. In this work, we present a critical analysis of the usage of dimensionality reduction in scientific domains outside of computer science. First, we conduct a bibliometric analysis of 21,249 academic publications that use dimensionality reduction to observe differences in the frequency of techniques across fields. Next, we conduct a survey of a 71-paper sample from four fields: biology, chemistry, physics, and business. Through this survey, we uncover common workflows, processes, and usage patterns, including the mixed use of confirmatory data analysis to validate a dataset and projection method and exploratory data analysis to then generate more hypotheses. We also find that misinterpretations and inappropriate usage is common, particularly in the visual interpretation of the resulting dimensionally reduced view. Lastly, we compare our observations with recent works in the visualization community in order to match work within our community to potential areas of impact outside our community. By comparing the usage found within scientific fields to the recent research output of the visualization community, we offer both validation of the progress of visualization research into dimensionality reduction and a call for action to produce techniques that meet the needs of scientific users.

Due to the intrinsic complexity of high-dimensional (HD) data, dimensionality reduction (DR) techniques cannot preserve all the structural characteristics of the original data. Therefore, DR techniques focus on preserving either local neighborhood structures (local techniques) or global structures such as pairwise distances between points (global techniques). However, both approaches can mislead analysts to erroneous conclusions about the overall arrangement of manifolds in HD data. For example, local techniques may exaggerate the compactness of individual manifolds, while global techniques may fail to separate clusters that are well-separated in the original space. In this research, we provide a deeper insight into Uniform Manifold Approximation with Two-phase Optimization (UMATO), a DR technique that addresses this problem by effectively capturing local and global structures. UMATO achieves this by dividing the optimization process of UMAP into two phases. In the first phase, it constructs a skeletal layout using representative points, and in the second phase, it projects the remaining points while preserving the regional characteristics. Quantitative experiments validate that UMATO outperforms widely used DR techniques, including UMAP, in terms of global structure preservation, with a slight loss in local structure. We also confirm that UMATO outperforms baseline techniques in terms of scalability and stability against initialization and subsampling, making it more effective for reliable HD data analysis. Finally, we present a case study and a qualitative demonstration that highlight UMATO's effectiveness in generating faithful projections, enhancing the overall reliability of visual analytics using DR.

Acute stroke demands prompt diagnosis and treatment to achieve optimal patient outcomes. However, the intricate and irregular nature of clinical data associated with acute stroke, particularly blood pressure (BP) measurements, presents substantial obstacles to effective visual analytics and decision-making. Through a year-long collaboration with experienced neurologists, we developed PhenoFlow, a visual analytics system that leverages the collaboration between human and Large Language Models (LLMs) to analyze the extensive and complex data of acute ischemic stroke patients. PhenoFlow pioneers an innovative workflow, where the LLM serves as a data wrangler while neurologists explore and supervise the output using visualizations and natural language interactions. This approach enables neurologists to focus more on decision-making with reduced cognitive load. To protect sensitive patient information, PhenoFlow only utilizes metadata to make inferences and synthesize executable codes, without accessing raw patient data. This ensures that the results are both reproducible and interpretable while maintaining patient privacy. The system incorporates a slice-and-wrap design that employs temporal folding to create an overlaid circular visualization. Combined with a linear bar graph, this design aids in exploring meaningful patterns within irregularly measured BP data. Through case studies, PhenoFlow has demonstrated its capability to support iterative analysis of extensive clinical datasets, reducing cognitive load and enabling neurologists to make well-informed decisions. Grounded in long-term collaboration with domain experts, our research demonstrates the potential of utilizing LLMs to tackle current challenges in data-driven clinical decision-making for acute ischemic stroke patients.

Large language models (LLMs) have facilitated significant strides in generating conversational agents, enabling seamless, contextually relevant dialogues across diverse topics. However, the existing LLM-driven conversational agents have fixed personalities and functionalities, limiting their adaptability to individual user needs. Creating personalized agent personas with distinct expertise or traits can address this issue. Nonetheless, we lack knowledge of how people customize and interact with agent personas. In this research, we investigated how users customize agent personas and their impact on interaction quality, diversity, and dynamics. To this end, we developed CloChat, an interface supporting easy and accurate customization of agent personas in LLMs. We conducted a study comparing how participants interact with CloChat and ChatGPT. The results indicate that participants formed emotional bonds with the customized agents, engaged in more dynamic dialogues, and showed interest in sustaining interactions. These findings contribute to design implications for future systems with conversational agents using LLMs.

We introduce VL2NL, a Large Language Model (LLM) framework that generates rich and diverse NL datasets using Vega-Lite specifications as input, thereby streamlining the development of Natural Language Interfaces (NLIs) for data visualization. To synthesize relevant chart semantics accurately and enhance syntactic diversity in each NL dataset, we leverage 1) a guided discovery incorporated into prompting so that LLMs can steer themselves to create faithful NL datasets in a self-directed manner; 2) a score-based paraphrasing to augment NL syntax along with four language axes. We also present a new collection of 1,981 real-world Vega-Lite specifications that have increased diversity and complexity than existing chart collections. When tested on our chart collection, VL2NL extracted chart semantics and generated L1/L2 captions with 89.4% and 76.0% accuracy, respectively. It also demonstrated generating and paraphrasing utterances and questions with greater diversity compared to the benchmarks. Last, we discuss how our NL datasets and framework can be utilized in real-world scenarios. The codes and chart collection are available at https://github.com/hyungkwonko/chart-llm.

We introduce CLeVer, a novel visualization system designed to analyze and enhance the performance of continual learning models by detecting task transition failures. Based on the literature review, we discovered and classified three primary causes of task transition failure in classification tasks: class/position inconsistency, biased/noisy samples, and diverse class scopes. These problems are critical in terms of model performance but were not tackled in prior research on continual learning. CLeVer is designed to address these challenges as an integrated system for model experiments and visual analysis. Firstly, users can easily configure the tasks for continual learning through a single JSON file. Then, our system automatically simulates the continual learning process in a relatively short time while generating data for visualization. Finally, the transition visualizer provides an effective visual representation of the task transition process where users can easily detect the task transition failures in continual learning. Our interview with machine learning experts and a case study with three participants demonstrate CLeVer’s utility in detecting and addressing such failures. We also discuss the system’s potential applicability and adaptability for various computer vision tasks while suggesting our future work.

As we enter the era of big data, a substantial amount of Input/Output (I/O) requests to storage devices are generated, making the maintenance of I/O performance important. Furthermore, I/O performance directly affects the overall user experience in edge devices. However, with the increasing complexity of systems, numerous factors influencing I/O performance have emerged, making it challenging to analyze and explore the overall I/O processing workflow. To address this issue, we introduce IoLens, a visual analytics tool that helps users explore system I/O performance from kernel I/O stack up to virtual file system and storage device drivers. Our tool helps users analyze I/O performance by identifying the overall workload of I/O requests and intuitively identifying anomalies. The effectiveness and applicability of IoLens have been validated through a usage scenario following a system engineer working on system kernels. A user study with four domain experts is conducted to further validate the usability of the tool.

A common way to evaluate the reliability of dimensionality reduction (DR) embeddings is to quantify how well labeled classes form compact, mutually separated clusters in the embeddings. This approach is based on the assumption that the classes stay as clear clusters in the original high-dimensional space. However, in reality, this assumption can be violated; a single class can be fragmented into multiple separated clusters, and multiple classes can be merged into a single cluster. We thus cannot always assure the credibility of the evaluation using class labels. In this paper, we introduce two novel quality measures-Label-Trustworthiness and Label-Continuity (Label-T&C)-advancing the process of DR evaluation based on class labels. Instead of assuming that classes are well-clustered in the original space, Label-T&C work by (1) estimating the extent to which classes form clusters in the original and embedded spaces and (2) evaluating the difference between the two. A quantitative evaluation showed that Label-T&C outperform widely used DR evaluation measures (e.g., Trustworthiness and Continuity, Kullback-Leibler divergence) in terms of the accuracy in assessing how well DR embeddings preserve the cluster structure, and are also scalable. Moreover, we present case studies demonstrating that Label-T&C can be successfully used for revealing the intrinsic characteristics of DR techniques and their hyperparameters.

Visual clustering is a common perceptual task in scatterplots that supports diverse analytics tasks (e.g., cluster identification). However, even with the same scatterplot, the ways of perceiving clusters (i.e., conducting visual clustering) can differ due to the differences among individuals and ambiguous cluster boundaries. Although such perceptual variability casts doubt on the reliability of data analysis based on visual clustering, we lack a systematic way to efficiently assess this variability. In this research, we study perceptual variability in conducting visual clustering, which we call Cluster Ambiguity. To this end, we introduce CLAMS, a data-driven visual quality measure for automatically predicting cluster ambiguity in monochrome scatterplots. We first conduct a qualitative study to identify key factors that affect the visual separation of clusters (e.g., proximity or size difference between clusters). Based on study findings, we deploy a regression module that estimates the human-judged separability of two clusters. Then, CLAMS predicts cluster ambiguity by analyzing the aggregated results of all pairwise separability between clusters that are generated by the module. CLAMS outperforms widely-used clustering techniques in predicting ground truth cluster ambiguity. Meanwhile, CLAMS exhibits performance on par with human annotators. We conclude our work by presenting two applications for optimizing and benchmarking data mining techniques using CLAMS. The interactive demo of CLAMS is available at clusterambiguity.dev.

Partitioning a dynamic network into subsets (i.e., snapshots) based on disjoint time intervals is a widely used technique for understanding how structural patterns of the network evolve. However, selecting an appropriate time window (i.e., slicing a dynamic network into snapshots) is challenging and time-consuming, often involving a trial-and-error approach to investigating underlying structural patterns. To address this challenge, we present MoNetExplorer, a novel interactive visual analytics system that leverages temporal network motifs to provide recommendations for window sizes and support users in visually comparing different slicing results. MoNetExplorer provides a comprehensive analysis based on window size, including (1) a temporal overview to identify the structural information, (2) temporal network motif composition, and (3) node-link-diagram-based details to enable users to identify and understand structural patterns at various temporal resolutions. To demonstrate the effectiveness of our system, we conducted a case study with network researchers using two real-world dynamic network datasets. Our case studies show that the system effectively supports users to gain valuable insights into the temporal and structural aspects of dynamic networks.

Large-scale Text-to-image Generation Models (LTGMs) (e.g., DALL-E), self-supervised deep learning models trained on a huge dataset, have demonstrated the capacity for generating high-quality open-domain images from multi-modal input. Although they can even produce anthropomorphized versions of objects and animals, combine irrelevant concepts in reasonable ways, and give variation to any user-provided images, we witnessed such rapid technological advancement left many visual artists disoriented in leveraging LTGMs more actively in their creative works. Our goal in this work is to understand how visual artists would adopt LTGMs to support their creative works. To this end, we conducted an interview study as well as a systematic literature review of 72 system/application papers for a thorough examination. A total of 28 visual artists covering 35 distinct visual art domains acknowledged LTGMs’ versatile roles with high usability to support creative works in automating the creation process (i.e., automation), expanding their ideas (i.e., exploration), and facilitating or arbitrating in communication (i.e., mediation). We conclude by providing four design guidelines that future researchers can refer to in making intelligent user interfaces using LTGMs.

The quality of parallel corpora used to train a Neural Machine Translation (NMT) model can critically influence the model's performance. Various approaches for refining parallel corpora have been introduced, but there is still much room for improvements, such as enhancing the efficiency and the quality of refinement. We introduce VANT, a novel visual analytics system for refining parallel corpora used in training an NMT model. Our system helps users to readily detect and filter noisy parallel corpora by (1) aiding the quality estimation of individual sentence pairs within the corpora by providing diverse quality metrics (e.g., cosine similarity, BLEU, length ratio) and (2) allowing users to visually examine and manage the corpora based on the pre-computed metrics scores. Our system's effectiveness and usefulness are demonstrated through a qualitative user study with eight participants, including four domain experts with real-world datasets.

We propose Steadiness and Cohesiveness, two novel metrics to measure the inter-cluster reliability of multidimensional projection (MDP), specifically how well the inter-cluster structures are preserved between the original high-dimensional space and the low-dimensional projection space. Measuring inter-cluster reliability is crucial as it directly affects how well inter-cluster tasks (e.g., identifying cluster relationships in the original space from a projected view) can be conducted; however, despite the importance of inter-cluster tasks, we found that previous metrics, such as Trustworthiness and Continuity, fail to measure inter-cluster reliability. Our metrics consider two aspects of the inter-cluster reliability: Steadiness measures the extent to which clusters in the projected space form clusters in the original space, and Cohesiveness measures the opposite. They extract random clusters with arbitrary shapes and positions in one space and evaluate how much the clusters are stretched or dispersed in the other space. Furthermore, our metrics can quantify pointwise distortions, allowing for the visualization of inter-cluster reliability in a projection, which we call a reliability map. Through quantitative experiments, we verify that our metrics precisely capture the distortions that harm inter-cluster reliability while previous metrics have difficulty capturing the distortions. A case study also demonstrates that our metrics and the reliability map 1) support users in selecting the proper projection techniques or hyperparameters and 2) prevent misinterpretation while performing inter-cluster tasks, thus allow an adequate identification of inter-cluster structure.

Finding the propagation scope for various types of issues in Software Product Lines (SPLs) is a complicated Multi-Criteria Decision Making (MCDM) problem. This task often requires human-in-the-loop data analysis, which covers not only multiple product attributes but also contextual information (e.g., internal policy, customer requirements, exceptional cases, cost efficiency). We propose an interactive visualization tool to support MCDM tasks in software issue propagation based on the user's mental model. Our tool enables users to explore multiple criteria with their insight intuitively and find the appropriate propagation scope.

Git metadata contains rich information for developers to understand the overall context of a large software development project. Thus it can help new developers, managers, and testers understand the history of development without needing to dig into a large pile of unfamiliar source code. However, the current tools for Git visualization are not adequate to analyze and explore the metadata: They focus mainly on improving the usability of Git commands instead of on helping users understand the development history. Furthermore, they do not scale for large and complex Git commit graphs, which can play an important role in understanding the overall development history. In this paper, we present Githru, an interactive visual analytics system that enables developers to effectively understand the context of development history through the interactive exploration of Git metadata. We design an interactive visual encoding idiom to represent a large Git graph in a scalable manner while preserving the topological structures in the Git graph. To enable scalable exploration of a large Git commit graph, we propose novel techniques (graph reconstruction, clustering, and Context-Preserving Squash Merge (CSM) methods) to abstract a large-scale Git commit graph. Based on these Git commit graph abstraction techniques, Githru provides an interactive summary view to help users gain an overview of the development history and a comparison view in which users can compare different clusters of commits. The efficacy of Githru has been demonstrated by case studies with domain experts using real-world, in-house datasets from a large software development team at a major international IT company. A controlled user study with 12 developers comparing Githru to previous tools also confirms the effectiveness of Githru in terms of task completion time.