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Andre Schultz

dblp:276/0724 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2020
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › network bioinformatics › biological network analysis › network visualization
metabolic network visualization		 0.412020
SAMMI: a semi-automated tool for the visualization of metabolic networks · Bioinform. 2020
Bioinformatics and computational biology › systems biology › constraint-based modeling
constraint-based metabolic modeling		 0.112020
SAMMI: a semi-automated tool for the visualization of metabolic networks · Bioinform. 2020

Methods — techniques the papers use, named apart from their topics

interactive map editing · 0.4genome-scale metabolic model simulation · 0.4
YearPublicationVenuePosition
2020 SAMMI: a semi-automated tool for the visualization of metabolic networks
abstract
SUMMARY: Here we present a browser-based Semi-Automated Metabolic Map Illustrator (SAMMI) for the visualization of metabolic networks. While automated features allow for easy network partitioning, navigation, and node positioning, SAMMI also offers a wide array of manual map editing features. This combination allows for fast, context-specific visualization of metabolic networks as well as the development of standardized, large-scale, visually appealing maps. The implementation of SAMMI with popular constraint-based modeling toolboxes also allows for effortless visualization of simulation results of genome-scale metabolic models. AVAILABILITY AND IMPLEMENTATION: SAMMI has been implemented as a standalone web-based tool and as plug-ins for the COBRA and COBRApy toolboxes. SAMMI and its COBRA plugins are available under the GPL 3.0 license and are available along with documentation, tutorials, and source code at www.SammiTool.com. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Andre Schultz, Rehan Akbani
 Bioinform.1