Hamza Kebiri

dblp:277/1333 · DBLP profile ↗
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5ranked-venue papers
2as first author
5since 2021 · last 2024
0000-0001-7592-3166ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 5 · 2 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 3 · 1 first-author · 3 since 2021
YearPublicationVenuePosition
2024 Improving Cross-Domain Brain Tissue Segmentation in Fetal MRI with Synthetic Data
Vladyslav Zalevskyi, Thomas Sanchez, Margaux Roulet, Jordina Aviles Verdera, Jana Hutter, Hamza Kebiri, Meritxell Bach Cuadra
MICCAI (1)6
2024 Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Camilo Calixto, Zeljka Krsnik, Davood Karimi, Meritxell Bach Cuadra
Medical Image Anal.1
2023 Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning
Hamza Kebiri, Ali Gholipour, Rizhong Lin, Lana Vasung, Davood Karimi, Meritxell Bach Cuadra
MICCAI (7)1
2023 Fetal brain tissue annotation and segmentation challenge results
abstract
In-utero fetal MRI is emerging as an important tool in the diagnosis and analysis of the developing human brain. Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context. However, manual segmentation of cerebral structures is time-consuming and prone to error and inter-observer variability. Therefore, we organized the Fetal Tissue Annotation (FeTA) Challenge in 2021 in order to encourage the development of automatic segmentation algorithms on an international level. The challenge utilized FeTA Dataset, an open dataset of fetal brain MRI reconstructions segmented into seven different tissues (external cerebrospinal fluid, gray matter, white matter, ventricles, cerebellum, brainstem, deep gray matter). 20 international teams participated in this challenge, submitting a total of 21 algorithms for evaluation. In this paper, we provide a detailed analysis of the results from both a technical and clinical perspective. All participants relied on deep learning methods, mainly U-Nets, with some variability present in the network architecture, optimization, and image pre- and post-processing. The majority of teams used existing medical imaging deep learning frameworks. The main differences between the submissions were the fine tuning done during training, and the specific pre- and post-processing steps performed. The challenge results showed that almost all submissions performed similarly. Four of the top five teams used ensemble learning methods. However, one team's algorithm performed significantly superior to the other submissions, and consisted of an asymmetrical U-Net network architecture. This paper provides a first of its kind benchmark for future automatic multi-tissue segmentation algorithms for the developing human brain in utero.
Kelly Payette, Hongwei Li 0004, Priscille de Dumast, Roxane Licandro, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Yuchen Pei, Lisheng Wang, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu 0014, Guotai Wang, ZunHyan Rieu, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira 0002, João L. Vilaça, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara 0001, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li 0003, Moona Mazher, Abdul Qayyum 0002, Domenec Puig, Hamza Kebiri, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Lana Vasung, Bjoern Menze, Meritxell Bach Cuadra, András Jakab
Medical Image Anal.46
2022 Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI
Athena Taymourtash, Hamza Kebiri, Ernst Schwartz, Karl-Heinz Nenning, Sébastien Tourbier, Gregor Kasprian, Daniela Prayer, Meritxell Bach Cuadra, Georg Langs
MICCAI (6)2