Collaborative 3D object detection leverages information sharing among connected autonomous vehicles (CAVs) to overcome occlusions and limited sensing range. In real-world deployments confront multiple heterogeneously coupled communication disturbances, such as asynchronicity, localization errors, and transmission noise. Existing fusion methods typically model and mitigate each disturbance in isolation, assuming ideal conditions and overlooking their joint effects. As a result, these interactions cause feature misalignment and degraded detection performance. To address this challenge, we propose the Dual-path Hierarchical Attention Fusion Module (DHAFM), which features a cooperative path to enrich CAV feature representations, a stable path to emphasize reliable ego-vehicle features, and a NoiseGate Fusion Module that dynamically reweights these paths based on estimated disturbance levels, prioritizing stability under severe noise and collaboration when communication is reliable. Extensive evaluations on OPV2V, V2XSet, and V2V4REAL benchmarks demonstrate that DHAFM achieves state-of-the-art 3D detection accuracy and markedly improved robustness under both individual and coupled disturbance scenarios.

MOTIVATION: Phage genome annotation plays a key role in the design of phage therapy. To date, there have been various genome annotation tools for phages, but most of these tools focus on mono-functional annotation and have complex operational processes. Accordingly, comprehensive and user-friendly platforms for phage genome annotation are needed. RESULTS: Here, we propose PhaGAA, an online integrated platform for phage genome annotation and analysis. By incorporating several annotation tools, PhaGAA is constructed to annotate the prophage genome at DNA and protein levels and provide the analytical results. Furthermore, PhaGAA could mine and annotate phage genomes from bacterial genome or metagenome. In summary, PhaGAA will be a useful resource for experimental biologists and help advance the phage synthetic biology in basic and application research. AVAILABILITY AND IMPLEMENTATION: PhaGAA is freely available at http://phage.xialab.info/.

With the number of phage genomes increasing, it is urgent to develop new bioinformatics methods for phage genome annotation. Promoter, a DNA region, is important for gene transcriptional regulation. In the era of post-genomics, the availability of data makes it possible to establish computational models for promoter identification with robustness. In this work, we introduce DPProm, a two-layer model composed of DPProm-1L and DPProm-2L, to predict promoters and their types for phages. On the first layer, as a dual-channel deep neural network ensemble method fusing multi-view features (sequence feature and handcrafted feature), the model DPProm-1L is proposed to identify whether a DNA sequence is a promoter or non-promoter. The sequence feature is extracted with convolutional neural network (CNN). And the handcrafted feature is the combination of free energy, GC content, cumulative skew, and Z curve features. On the second layer, DPProm-2L based on CNN is trained to predict the promoters' types (host or phage). For the realization of prediction on the whole genomes, the model DPProm, combines with a novel sequence data processing workflow, which contains sliding window and merging sequences modules. Experimental results show that DPProm outperforms the state-of-the-art methods, and decreases the false positive rate effectively on whole genome prediction. Furthermore, we provide a user-friendly web at http://bioinfo.ahu.edu.cn/DPProm. We expect that DPProm can serve as a useful tool for identification of promoters and their types.

Most existing cluster-based cross-domain person re-identification (re-id) methods only pre-train the re-id model on the source domain. Unfortunately, the pre-trained model may not perform well on the target domain due to the large domain gap between source and target domains, which is harmful to the following optimization. In this paper, we propose a novel Self-supervised Pre-training method on the Target Domain (SPTD), which pre-trains the model on both the source and target domains in a self-supervised manner. Specifically, SPTD uses different kinds of data augmentation manners to simulate different intra-class changes and constraints the consistency between the augmented data distribution and the original data distribution. As a result, the pre-trained model involves some specific discriminative knowledge on the target domain and is beneficial to the following optimization. It is easy to combine the proposed SPTD with other cluster-based cross-domain re-id methods just by replacing the original pre-trained model with our pre-trained model. Comprehensive experiments on three widely used datasets, i.e. Market1501, DukeMTMC-ReID and MSMT17, demonstrate the effectiveness of SPTD. Especially, the final results surpass previous state-of-the-art methods by a large margin.

In existing literature, the distribution of pixel observations is analyzed with models designed for the video foreground detection task. However, it is possible that the background and foreground share similar observations, causing false detections. We propose a novel foreground detection method called Deep Variation Transformation Network (DVTN), focusing on analyzing the pixel variations instead of distributions. In particular, pixel variations are represented by a sequence of pixel observations, and DVTN is trained to transform the pixel variations into a new space, where the observations can be classified easily. Following this, the output of DVTN is utilized by a linear classifier to label pixels as foreground or background. As a result of the global analysis and the strong learning ability of DVTN, the proposed approach adaptively learns a good transformation from pixel variations to probabilities of labels to improve performance. Comprehensive experiments on several benchmark datasets demonstrate the superiority of our DVTN approach compared to both state-of-the-art deep learning and traditional methods, especially in scenes lacking texture and color information. Code is available at https://github.com/Zhangjunyin/DVTN.