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Ciara Frances Loughrey

dblp:280/0102 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2021
0000-0002-2295-1320ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 88% Computational science and engineering · 12%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
cancer research
0.512021
The topology of data: opportunities for cancer research · Bioinform. 2021
Bioinformatics and computational biology
topological data analysis
0.512021
The topology of data: opportunities for cancer research · Bioinform. 2021
Bioinformatics and computational biology
biomedical data analysis
0.112021
The topology of data: opportunities for cancer research · Bioinform. 2021
Computational science and engineering
high-dimensional data analysis
0.112021
The topology of data: opportunities for cancer research · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

topological data analysis · 0.5persistent homology · 0.5
YearPublicationVenuePosition
2021 The topology of data: opportunities for cancer research
abstract
MOTIVATION: Topological methods have recently emerged as a reliable and interpretable framework for extracting information from high-dimensional data, leading to the creation of a branch of applied mathematics called Topological Data Analysis (TDA). Since then, TDA has been progressively adopted in biomedical research. Biological data collection can result in enormous datasets, comprising thousands of features and spanning diverse datatypes. This presents a barrier to initial data analysis as the fundamental structure of the dataset becomes hidden, obstructing the discovery of important features and patterns. TDA provides a solution to obtain the underlying shape of datasets over continuous resolutions, corresponding to key topological features independent of noise. TDA has the potential to support future developments in healthcare as biomedical datasets rise in complexity and dimensionality. Previous applications extend across the fields of neuroscience, oncology, immunology and medical image analysis. TDA has been used to reveal hidden subgroups of cancer patients, construct organizational maps of brain activity and classify abnormal patterns in medical images. The utility of TDA is broad and to understand where current achievements lie, we have evaluated the present state of TDA in cancer data analysis. RESULTS: This article aims to provide an overview of TDA in Cancer Research. A brief introduction to the main concepts of TDA is provided to ensure that the article is accessible to readers who are not familiar with this field. Following this, a focussed literature review on the field is presented, discussing how TDA has been applied across heterogeneous datatypes for cancer research.
Ciara Frances Loughrey, Padraig Fitzpatrick, Nick Orr, Anna Jurek-Loughrey
Bioinform.1