VLDB 2026 Research / reviewers in the wild / expert
Shailendra Asthana
dblp:284/1535
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2023
—ORCID · unresolved
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › protein analysis › protein-protein interaction
protein-protein interaction network analysis |
0.7 | 1 | 2023 | konnect2prot: a web application to explore the protein properties in a functional protein-protein interaction network · Bioinform. 2023 |
Bioinformatics and computational biology › statistical genetics
disease gene analysis |
0.2 | 1 | 2023 | konnect2prot: a web application to explore the protein properties in a functional protein-protein interaction network · Bioinform. 2023 |
Methods — techniques the papers use, named apart from their topics
topological network analysis · 0.7ontological knowledge integration · 0.7
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2023 | konnect2prot: a web application to explore the protein properties in a functional protein-protein interaction networkabstractMOTIVATION: The regulation of proteins governs the biological processes and functions and, therefore, the organisms' phenotype. So there is an unmet need for a systematic tool for identifying the proteins that play a crucial role in information processing in a protein-protein interaction (PPI) network. However, the current protein databases and web servers still lag behind to provide an end-to-end pipeline that can leverage the topological understanding of a context-specific PPI network to identify the influential spreaders. Addressing this, we developed a web application, 'konnect2prot' (k2p), which can generate context-specific directional PPI network from the input proteins and detect their biological and topological importance in the network. RESULTS: We pooled together a large amount of ontological knowledge, parsed it down into a functional network, and gained insight into the molecular underpinnings of the disease development by creating a one-stop junction for PPI data. k2p contains both local and global information about a protein, such as protein class, disease mutations, ligands and PDB structure, enriched processes and pathways, multi-disease interactome and hubs and bottlenecks in the directional network. It also identifies spreaders in the network and maps them to disease hallmarks to determine whether they can affect the disease state or not. AVAILABILITY AND IMPLEMENTATION: konnect2prot is freely accessible using the link https://konnect2prot.thsti.in. The code repository is https://github.com/samrat-lab/k2p_bioinfo-2022. Dipanka Sarmah, Shailendra Asthana, Samrat Chatterjee |
Bioinform. | 3 |