Neural fields have emerged as a powerful representation for 3D geometry, enabling compact and continuous modeling of complex shapes. Despite their expressive power, manipulating neural fields in a controlled and accurate manner -- particularly under spatial constraints -- remains an open challenge, as existing approaches struggle to balance surface quality, robustness, and efficiency. We address this by introducing a novel method for handle-guided neural field deformation, which leverages discrete local surface representations to optimize the As-Rigid-As-Possible deformation energy. To this end, we propose the local patch mesh representation, which discretizes level sets of a neural signed distance field by projecting and deforming flat mesh patches guided solely by the SDF and its gradient. We conduct a comprehensive evaluation showing that our method consistently outperforms baselines in deformation quality, robustness, and computational efficiency. We also present experiments that motivate our choice of discretization over marching cubes. By bridging classical geometry processing and neural representations through local patch meshing, our work enables scalable, high-quality deformation of neural fields and paves the way for extending other geometric tasks to neural domains.

Abstract Reconstructing 2D curves from sample points has long been a critical challenge in computer graphics, finding essential applications in vector graphics. The design and editing of curves on surfaces has only recently begun to receive attention, primarily relying on human assistance, and where not, limited by very strict sampling conditions. In this work, we formally improve on the state‐of‐the‐art requirements and introduce an innovative algorithm capable of reconstructing closed curves directly on surfaces from a given sparse set of sample points. We extend and adapt a state‐of‐the‐art planar curve reconstruction method to the realm of surfaces while dealing with the challenges arising from working on non‐Euclidean domains. We demonstrate the robustness of our method by reconstructing multiple curves on various surface meshes. We explore novel potential applications of our approach, allowing for automated reconstruction of curves on Riemannian manifolds.

Plants are among the most complex objects to be modeled in computer graphics. While a large body of work is concerned with structural modeling and the dynamic reaction to external forces, our work focuses on the dynamic deformation caused by plant internal wilting processes. To this end, we motivate the simulation of water transport inside the plant which is a key driver of the wilting process. We then map the change of water content in individual plant parts to branch stiffness values and obtain the wilted plant shape through a position based dynamics simulation. We show, that our approach can recreate measured wilting processes and does so with a higher fidelity than approaches ignoring the internal water flow. Realistic plant wilting is not only important in a computer graphics context but can also aid the development of machine learning algorithms in agricultural applications through the generation of synthetic training data.

Abstract The slime mold algorithm has recently been under the spotlight thanks to its compelling properties studied across many disciplines like biology, computation theory, and artificial intelligence. However, existing implementations act only on planar surfaces, and no adaptation to arbitrary surfaces is available. Inspired by this gap, we propose a novel characterization of the mold algorithm to work on arbitrary curved surfaces. Our algorithm is easily parallelizable on GPUs and allows to model the evolution of millions of agents in real‐time over surface meshes with several thousand triangles, while keeping the simplicity proper of the slime paradigm. We perform a comprehensive set of experiments, providing insights on stability, behavior, and sensibility to various design choices. We characterize a broad collection of behaviors with a limited set of controllable and interpretable parameters, enabling a novel family of heterogeneous and high‐quality procedural textures. The appearance and complexity of these patterns are well‐suited to diverse materials and scopes, and we add another layer of generalization by allowing different mold species to compete and interact in parallel.

Abstract Spectral geometric methods have brought revolutionary changes to the field of geometry processing. Of particular interest is the study of the Laplacian spectrum as a compact, isometry and permutation‐invariant representation of a shape. Some recent works show how the intrinsic geometry of a full shape can be recovered from its spectrum, but there are approaches that consider the more challenging problem of recovering the geometry from the spectral information of partial shapes. In this paper, we propose a possible way to fill this gap. We introduce a learning‐based method to estimate the Laplacian spectrum of the union of partial non‐rigid 3D shapes, without actually computing the 3D geometry of the union or any correspondence between those partial shapes. We do so by operating purely in the spectral domain and by defining the union operation between short sequences of eigenvalues. We show that the approximated union spectrum can be used as‐is to reconstruct the complete geometry [MRC*19], perform region localization on a template [RTO*19] and retrieve shapes from a database, generalizing ShapeDNA [RWP06] to work with partialities. Working with eigenvalues allows us to deal with unknown correspondence, different sampling, and different discretizations (point clouds and meshes alike), making this operation especially robust and general. Our approach is data‐driven and can generalize to isometric and non‐isometric deformations of the surface, as long as these stay within the same semantic class (e.g., human bodies or horses), as well as to partiality artifacts not seen at training time.

The multiplication of a matrix by its transpose, ATA, appears as an intermediate operation in the solution of a wide set of problems. In this paper, we propose a new cache-oblivious algorithm (AtA) for computing this product, based upon the classical Strassen algorithm as a sub-routine. In particular, we decrease the computational cost to the time required by Strassen’s algorithm, amounting to floating point operations. AtA works for generic rectangular matrices, and exploits the peculiar symmetry of the resulting product matrix for saving memory. In addition, we provide an extensive implementation study of AtA in a shared memory system, and extend its applicability to a distributed environment. To support our findings, we compare our algorithm with state-of-the-art solutions specialized in the computation of ATA. Our experiments highlight good scalability with respect to both the matrix size and the number of involved processes, as well as favorable performance for both the parallel paradigms and the sequential implementation, when compared with other methods in the literature.

Abstract We propose a novel approach for the approximation and transfer of signals across 3D shapes. The proposed solution is based on taking pointwise polynomials of the Fourier‐like Laplacian eigenbasis, which provides a compact and expressive representation for general signals defined on the surface. Key to our approach is the construction of a new orthonormal basis upon the set of these linearly dependent polynomials. We analyze the properties of this representation, and further provide a complete analysis of the involved parameters. Our technique results in accurate approximation and transfer of various families of signals between near‐isometric and non‐isometric shapes, even under poor initialization. Our experiments, showcased on a selection of downstream tasks such as filtering and detail transfer, show that our method is more robust to discretization artifacts, deformation and noise as compared to alternative approaches.

MOTIVATION: SBML is the most widespread language for the definition of biochemical models. Although dozens of SBML simulators are available, there is a general lack of support to the integration of SBML models within open-standard general-purpose simulation ecosystems. This hinders co-simulation and integration of SBML models within larger model networks, in order to, e.g. enable in silico clinical trials of drugs, pharmacological protocols, or engineering artefacts such as biomedical devices against Virtual Physiological Human models. Modelica is one of the most popular existing open-standard general-purpose simulation languages, supported by many simulators. Modelica models are especially suited for the definition of complex networks of heterogeneous models from virtually all application domains. Models written in Modelica (and in 100+ other languages) can be readily exported into black-box Functional Mock-Up Units (FMUs), and seamlessly co-simulated and integrated into larger model networks within open-standard language-independent simulation ecosystems. RESULTS: In order to enable SBML model integration within heterogeneous model networks, we present SBML2Modelica, a software system translating SBML models into well-structured, user-intelligible, easily modifiable Modelica models. SBML2Modelica is SBML Level 3 Version 2-compliant and succeeds on 96.47% of the SBML Test Suite Core (with a few rare, intricate and easily avoidable combinations of constructs unsupported and cleanly signalled to the user). Our experimental campaign on 613 models from the BioModels database (with up to 5438 variables) shows that the major open-source (general-purpose) Modelica and FMU simulators achieve performance comparable to state-of-the-art specialized SBML simulators. AVAILABILITY AND IMPLEMENTATION: SBML2Modelica is written in Java and is freely available for non-commercial use at https://bitbucket.org/mclab/sbml2modelica.