Danli Shi

dblp:306/7648 · DBLP profile ↗
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8ranked-venue papers
0as first author
8since 2021 · last 2026
0000-0001-6094-137XORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 5 · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 4 since 2021Artificial intelligence and machine learning · 3 · 3 since 2021
YearPublicationVenuePosition
2026 DiffNR: Diffusion-Enhanced Neural Representation Optimization for Sparse-View 3D Tomographic Reconstruction
abstract
Neural representations (NRs), such as neural fields and 3D Gaussians, effectively model volumetric data in computed tomography (CT) but suffer from severe artifacts under sparse-view settings. To address this, we propose DiffNR, a novel framework that enhances NR optimization with diffusion priors. At its core is SliceFixer, a single-step diffusion model designed to correct artifacts in degraded slices. We integrate specialized conditioning layers into the network and develop tailored data curation strategies to support model finetuning. During reconstruction, SliceFixer periodically generates pseudo-reference volumes, providing auxiliary 3D perceptual supervision to fix underconstrained regions. Compared to prior methods that embed CT solvers into time-consuming iterative denoising, our repair-and-augment strategy avoids frequent diffusion model queries, leading to better runtime performance. Extensive experiments show that DiffNR improves PSNR by 3.99 dB on average, generalizes well across domains, and maintains efficient optimization.
Shiyan Su, Ruyi Zha, Danli Shi, Hongdong Li, Xuelian Cheng
AAAI3
2026 Predicting diabetic macular edema treatment responses using OCT: Dataset and methods of APTOS competition
abstract
• First challenge to focus on pre-treatment stratification for diabetic macular edema (DME): This study pioneers the use of pre-treatment OCT biomarkers to predict individual responses to anti-VEGF therapy, advancing the concept of personalized medicine in DME management. • Large-scale, publicly accessible OCT dataset: The competition provides one of the most comprehensive open-access DME datasets to date, comprising tens of thousands of OCT images from 2,000 patients, significantly addressing the field’s data scarcity. The dataset includes both per-eye and per-scan annotations for several critical retinal biomarkers, enabling a wide range of supervised learning applications. • Benchmark for future research: With 170 registered teams and 41 finalists, the challenge fostered broad engagement. The best team achieved an AUC of 80.06%, highlighting the feasibility of accurate outcome prediction. The challenge provides standardized evaluation metrics and a curated leaderboard, laying the groundwork for reproducible and comparable AI model development in ophthalmic treatment prediction. Diabetic macular edema (DME) significantly contributes to visual impairment in diabetic patients. Treatment responses to intravitreal therapies vary, highlighting the need for patient stratification to predict therapeutic benefits and enable personalized strategies. To our knowledge, this study is the first to explore pre-treatment stratification for predicting DME treatment responses. To advance this research, we organized the 2nd Asia-Pacific Tele-Ophthalmology Society (APTOS) Big Data Competition in 2021. The competition focused on improving predictive accuracy for anti-VEGF therapy responses using ophthalmic OCT images. We provided a dataset containing tens of thousands of OCT images from 2,000 patients with labels across four sub-tasks. This paper details the competition’s structure, dataset, leading methods, and evaluation metrics. The competition attracted strong scientific community participation, with 170 teams initially registering and 41 reaching the final round. The top-performing team achieved an AUC of 80.06%, highlighting the potential of AI in personalized DME treatment and clinical decision-making.
Weiyi Zhang 0004, Peranut Chotcomwongse, Yinwen Li, Pusheng Xu, Ruijie Yao, Lianhao Zhou, Qiping Zhou, Shoujin Huang, Zihao Jin, Florence H. T. Chung, Yalin Zheng, Mingguang He, Danli Shi, Paisan Ruamviboonsuk
Medical Image Anal.17
2025 OphCLIP: Hierarchical Retrieval-Augmented Learning for Ophthalmic Surgical Video-Language Pretraining
abstract
Surgical practice involves complex visual interpretation, procedural skills, and advanced medical knowledge, making surgical vision-language pretraining (VLP) particularly challenging due to this complexity and the limited availability of annotated data. To address the gap, we propose OphCLIP, a hierarchical retrieval-augmented vision-language pretraining framework specifically designed for ophthalmic surgical workflow understanding. OphCLIP leverages the OphVL dataset we constructed, a large-scale and comprehensive collection of over 375K hierarchically structured video-text pairs with tens of thousands of different combinations of attributes (surgeries, phases/operations/actions, instruments, medications, as well as more advanced aspects like the causes of eye diseases, surgical objectives, and postoperative recovery recommendations, etc). These hierarchical video-text correspondences enable OphCLIP to learn both fine-grained and long-term visual representations by aligning short video clips with detailed narrative descriptions and full videos with structured titles, capturing intricate surgical details and high-level procedural insights, respectively. Our OphCLIP also designs a retrieval-augmented pretraining framework to leverage the underexplored large-scale silent surgical procedure videos, automatically retrieving semantically relevant content to enhance the representation learning of narrative videos. Evaluation across 11 datasets for phase recognition and multi-instrument identification shows OphCLIP's robust generalization and superior performance.
Kun Yuan 0004, Yaling Shen, Xiaohao Xu, Wei Li 0320, Zhongxing Xu, Zelin Peng, Siyuan Yan, Vinkle Srivastav, Diping Song, Tianbin Li, Danli Shi, Jin Ye 0002, Nicolas Padoy, Nassir Navab, Junjun He, ZongYuan Ge
ICCV15
2024 Fundus2Video: Cross-Modal Angiography Video Generation from Static Fundus Photography with Clinical Knowledge Guidance
Weiyi Zhang 0004, Siyu Huang, Jiancheng Yang, ZongYuan Ge, Yingfeng Zheng, Danli Shi, Mingguang He
MICCAI (1)7
2023 Medical visual question answering: A survey
Donghao Zhang 0004, Qingyi Tao, Danli Shi, Gholamreza Haffari, Qi Wu 0001, Mingguang He, ZongYuan Ge
Artif. Intell. Medicine4
2023 EBD: an eye biomarker database
abstract
MOTIVATION: Many ophthalmic disease biomarkers have been identified through comprehensive multiomics profiling, and hold significant potential in advancing the diagnosis, prognosis, and management of diseases. Meanwhile, the eye itself serves as a natural biomarker for several systemic diseases including neurological, renal, and cardiovascular systems. We aimed to collect and standardize this eye biomarkers information and construct the eye biomarker database (EBD) to provide ophthalmologists with a platform to search, analyze, and download these eye biomarker data. RESULTS: In this study, we present the EBD , a world-first online compilation comprising 889 biomarkers for 26 ocular diseases and 939 eye biomarkers for 181 systemic diseases. The EBD also includes the information of 78 "nonbiomarkers"-the objects that have been proven cannot be biomarkers. Biological function and network analysis were conducted for these ocular disease biomarkers, and several hub pathways and common network topology characteristics were newly identified, which may promote future ocular disease biomarker discovery and characterizes the landscape of biomarkers for eye diseases at the pathway and network level. The EBD is expected to yield broader utility among developmental biologists and clinical scientists in and outside of the eye field by assisting in the identification of biomarkers linked to eye disorders and related systemic diseases. AVAILABILITY AND IMPLEMENTATION: EBD is available at http://www.eyeseeworld.com/ebd/index.html.
Xueli Zhang, Lingcong Kong, Shunming Liu, Xiayin Zhang, Xianwen Shang, Zhuoting Zhu, Jason Ha, Katerina V. Kiburg, Chunwen Zheng, Yunyan Hu, Guanrong Wu, Yingying Liang, Mengxia He, Xiaohe Bai, Danli Shi, Wei Wang 0077, Haining Yuan, Huiying Liang, Honghua Yu, Lei Zhang 0095, Mingguang He
Bioinform.19
2023 Contrastive pre-training and linear interaction attention-based transformer for universal medical reports generation
Donghao Zhang 0004, Danli Shi, Renjing Xu, Qingyi Tao, Lin Wu 0001, Mingguang He, ZongYuan Ge
J. Biomed. Informatics3
2022 Camera Adaptation for Fundus-Image-Based CVD Risk Estimation
Danli Shi, Donghao Zhang 0004, Xianwen Shang, Mingguang He, ZongYuan Ge
MICCAI (2)2