Tabular data have been playing a mostly important role in diverse real-world fields, such as healthcare, engineering, finance, etc. The recent success of deep learning has fostered many deep networks (e.g., Transformer, ResNet) based tabular learning methods. Generally, existing deep tabular machine learning methods are along with the two paradigms, i.e., in-learning and pre-learning. In-learning methods need to train networks from scratch or impose extra constraints to regulate the representations which nonetheless train multiple tasks simultaneously and make learning more difficult, while pre-learning methods design several pretext tasks for pre-training and then conduct task-specific fine-tuning, which however need much extra training effort with prior knowledge. In this paper, we introduce a novel deep Tabular Representation Corrector, TRC, to enhance any trained deep tabular model's representations without altering its parameters in a model-agnostic manner. Specifically, targeting the representation shift and representation redundancy that hinder prediction, we propose two tasks, i.e., (i) Tabular Representation Re-estimation, that involves training a shift estimator to calculate the inherent shift of tabular representations to subsequently mitigate it, thereby re-estimating the representations and (ii) Tabular Space Mapping, that transforms the above re-estimated representations into a light-embedding vector space via a coordinate estimator while preserves crucial predictive information to minimize redundancy. The two tasks jointly enhance the representations of deep tabular models without touching on the original models thus enjoying high efficiency. Finally, we conduct extensive experiments on state-of-the-art deep tabular machine learning models coupled with TRC on various tabular benchmarks which have shown consistent superiority.

Diffusion-based generative models have recently excelled in generating molecular conformations but struggled with the generalization issue -- models trained on one dataset may produce meaningless conformations on out-of-distribution molecules. On the other hand, distance geometry serves as a generalizable tool for the traditional computational chemistry methods of molecular conformation, which is predicated on the assumption that it is possible to adequately define the set of all potential conformations of any non-rigid molecular system using purely geometric constraints. In this work, we for the first time explicitly incorporate distance geometry constraints into pretraining phase of diffusion-based molecular generation models to improve the generalizability. Inspired by the classical distance geometry solution designed for solving the molecular distance geometry problem, we propose MiGDiff, a Metrization-Informed Geometric Diffusion framework. MiGDiff injects distance geometry constraints by pretraining the deep geometric diffusion backbone within the Metrization sampling approach, yielding a "Metrization-driven pretraining + Data-driven finetuning" paradigm. Experimental results demonstrate that MiGDiff outperforms state-of-the-art methods and possesses strong generalization capabilities, particularly on generating previously unseen molecules, revealing the vast untapped potential of combining traditional computational methods with deep generative models for 3D molecular generation.

Anomaly detection, indicating to identify the anomalies that significantly deviate from the majority normal instances of data, has been an important role in machine learning and related applications. Despite the significant success achieved in anomaly detection on image and text data, the accurate Tabular Anomaly Detection (TAD) has still been hindered due to the lack of clear prior semantic information in the tabular data. Most state-of-the-art TAD studies are along the line of reconstruction, which first reconstruct training data and then use reconstruction errors to decide anomalies; however, reconstruction on training data can still hardly distinguish anomalies due to the data entanglement in their representations. To address this problem, in this paper, we propose a novel approach Decomposed Representation Learning (DRL), to re-map data into a tailor-designed constrained space, in order to capture the underlying shared patterns of normal samples and differ anomalous patterns for TAD. Specifically, we enforce the representation of each normal sample in the latent space to be decomposed into a weighted linear combination of randomly generated orthogonal basis vectors, where these basis vectors are both data-free and training-free. Furthermore, we enhance the discriminative capability between normal and anomalous patterns in the latent space by introducing a novel constraint that amplifies the discrepancy between these two categories, supported by theoretical analysis. Finally, extensive experiments on 40 tabular datasets and 16 competing tabular anomaly detection algorithms show that our method achieves state-of-the-art performance.

Few-shot tabular learning, in which machine learning models are trained with a limited amount of labeled data, provides a cost-effective approach to addressing real-world challenges. The advent of Large Language Models (LLMs) has sparked interest in leveraging their pre-trained knowledge for few-shot tabular learning. Despite promising results, existing approaches either rely on test-time knowledge extraction, which introduces undesirable latency, or text-level knowledge, which leads to unreliable feature engineering. To overcome these limitations, we propose Latte, a training-time knowledge extraction framework that transfers the latent prior knowledge within LLMs to optimize a more generalized downstream model. Latte enables general knowledge-guided downstream tabular learning, facilitating the weighted fusion of information across different feature values while reducing the risk of overfitting to limited labeled data. Furthermore, Latte is compatible with existing unsupervised pre-training paradigms and effectively utilizes available unlabeled samples to overcome the performance limitations imposed by an extremely small labeled dataset. Extensive experiments on various few-shot tabular learning benchmarks demonstrate the superior performance of Latte, establishing it as a state-of-the-art approach in this domain. Our code is available at https://github.com/ruxueshi/Latte.git.

Tabular data have been playing a vital role in diverse real-world fields, including healthcare, finance, etc. With the recent success of Large Language Models (LLMs), early explorations of extending LLMs to the domain of tabular data have been developed. Most of these LLM-based methods typically first serialize tabular data into natural language descriptions, and then tune LLMs or directly infer on these serialized data. However, these methods suffer from two key inherent issues: (i) data perspective: existing data serialization methods lack universal applicability for structured tabular data, and may pose privacy risks through direct textual exposure, and (ii) model perspective: LLM fine-tuning methods struggle with tabular data, and in-context learning scalability is bottle-necked by input length constraints (suitable for few-shot learning). This work explores a novel direction of integrating LLMs into tabular data through logical decision tree rules as intermediaries, proposing a decision tree enhancer with LLM-derived rule for tabular prediction, DeLTa. The proposed DeLTa avoids tabular data serialization, and can be applied to full data learning setting without LLM fine-tuning. Specifically, we leverage the reasoning ability of LLMs to redesign an improved rule given a set of decision tree rules. Furthermore, we provide a calibration method for original decision trees via new generated rule by LLM, which approximates the error correction vector to steer the original decision tree predictions in the direction of ``errors'' reducing. Finally, extensive experiments on diverse tabular benchmarks show that our method achieves state-of-the-art performance.

Medical time series has been playing a vital role in real-world healthcare systems as valuable information in monitoring health conditions of patients. Traditional methods towards medical time series classification rely on handcrafted feature extraction and statistical methods; with the recent advancement of artificial intelligence, the machine learning and deep learning methods have become more popular. However, existing methods often fail to fully model the complex spatial dynamics under different scales, which ignore the dynamic multi-resolution spatial and temporal joint inter-dependencies. Moreover, they are less likely to consider the special baseline wander problem as well as the multi-view characteristics of medical time series, which largely hinders their prediction performance. To address these limitations, we propose a Multi-resolution Spatiotemporal Graph Learning framework, MedGNN, for medical time series classification. Specifically, we first propose to construct multi-resolution adaptive graph structures to learn dynamic multi-scale embeddings. Then, to address the baseline wander problem, we propose Difference Attention Networks to operate self-attention mechanisms on the finite difference for temporal modeling. Moreover, to learn the multi-view characteristics, we utilize the Frequency Convolution Networks to capture complementary information of medical time series from the frequency domain. In addition, we introduce the Multi-resolution Graph Transformer architecture to model the dynamic dependencies and fuse the information from different resolutions. Finally, we have conducted extensive experiments on multiple medical real-world datasets that demonstrate the superior performance of our method. Our Code is available at this repository: https://github.com/aikunyi/MedGNN.

In the realm of single-cell analysis, accurately predicting gene expressions is crucial for understanding cellular functions and interactions. Traditional approaches often face significant challenges due to intrinsic noise, high dimensionality, and limited data availability in single-cell datasets. On the other hand, deep learning methods are prone to overfitting and perform poorly with limited data. This paper introduces a novel framework, Prototype-based Proximal Neural Factorization (PPNF), which harnesses the power of prototype learning and neural factorization to address these issues. Our method leverages a robust learning paradigm that identifies representative prototypes from single-cell data, facilitating a more resilient and interpretable data representations. We validate our approach using a diverse set of single-cell datasets, demonstrating that our method significantly outperforms existing techniques in terms of both robustness and accuracy. PPNF shows its effectiveness even with limited data, thereby reducing the financial and computational burden associated with high-throughput technologies. By enhancing the robustness and generalizability of single-cell gene expression predictions, our framework provides significant benefits for advancing the analysis and interpretation of single-cell gene expression data, particularly in data-limited scenarios, demonstrating its potential for more cost-effective applications.

Tabular data have been playing a mostly important role in diverse real-world fields, such as healthcare, engineering, finance, etc. With the recent success of deep learning, many tabular machine learning (ML) methods based on deep networks (e.g., Transformer, ResNet) have achieved competitive performance on tabular benchmarks. However, existing deep tabular ML methods suffer from the representation entanglement and localization, which largely hinders their prediction performance and leads to performance inconsistency on tabular tasks. To overcome these problems, we explore a novel direction of applying prototype learning for tabular ML and propose a prototype-based tabular representation learning framework, PTaRL, for tabular prediction tasks. The core idea of PTaRL is to construct prototype-based projection space (P-Space) and learn the disentangled representation around global data prototypes. Specifically, PTaRL mainly involves two stages: (i) Prototype Generating, that constructs global prototypes as the basis vectors of P-Space for representation, and (ii) Prototype Projecting, that projects the data samples into P-Space and keeps the core global data information via Optimal Transport. Then, to further acquire the disentangled representations, we constrain PTaRL with two strategies: (i) to diversify the coordinates towards global prototypes of different representations within P-Space, we bring up a diversifying constraint for representation calibration; (ii) to avoid prototype entanglement in P-Space, we introduce a matrix orthogonalization constraint to ensure the independence of global prototypes. Finally, we conduct extensive experiments in PTaRL coupled with state-of-the-art deep tabular ML models on various tabular benchmarks and the results have shown our consistent superiority.

Unsupervised Anomaly Detection (UAD) is a key data mining problem owing to its wide real-world applications. Due to the complete absence of supervision signals, UAD methods rely on implicit assumptions about anomalous patterns (e.g., scattered/sparsely/densely clustered) to detect anomalies. However, real-world data are complex and vary significantly across different domains. No single assumption can describe such complexity and be valid in all scenarios. This is also confirmed by recent research that shows no UAD method is omnipotent [1]. Based on above observations, instead of searching for a magic universal winner assumption, we seek to design a general UAD Booster (UADB) that empowers any UAD models with adaptability to different data. This is a challenging task given the heterogeneous model structures and assumptions adopted by existing UAD methods. To achieve this, we dive deep into the UAD problem and find that compared to normal data, anomalies (i) lack clear structure/pattern in feature space, thus (ii) harder to learn by model without a suitable assumption, and finally, leads to (iii) high variance between different learners. In light of these findings, we propose to (i) distill the knowledge of the source UAD model to an imitation learner (booster) that holds no data assumption, then (ii) exploit the variance between them to perform automatic correction, and thus (iii) improve the booster over the original UAD model. We use a neural network as the booster for its strong expressive power as a universal approximator and ability to perform flexible posthoc tuning. Note that UADB is a model-agnostic framework that can enhance heterogeneous UAD models in a unified way. Extensive experiments on over 80 tabular datasets demonstrate the effectiveness of UADB. To facilitate further research, code, figures, and datasets are available at UADB’s Github repository1.

The aging of global population is witnessing increasing prevalence of spinal disorders. According to latest statistics, nearly five percent of the global population is suffering from spinal disorders. To relieve the pain, many spine patients tend to choose surgeries. However, recent evidences reveal that some spine patients can self-heal over time with nonoperative treatment and even surgeries may not ease the pain for some others, which raises a critical question regarding the appropriateness of such surgeries. Furthermore, the complex and time-consuming diagnostic process places a great burden on both clinicians and patients. Due to the development of web technology, it is possible for spine patients to obtain decision making suggestions on the Internet. The uniqueness of web technology, including its popularity, convenience, and immediacy, makes intelligent healthcare techniques, especially Treatment Outcome Forecasting (TOF), able to support clinical decision-making for doctors and healthcare providers. Despite a few machine-learning-based methods have been proposed for TOF, their performance and feasibility are mostly unsatisfactory due to the neglect of a few practical challenges (caused by applying on the Internet), including biased data selection, noisy supervision, and patient noncompliance. In light of this, we propose DeepTOF, a novel end-to-end deep learning model to cope with the unique challenges in web-based long-term continuous spine TOF. In particular, we combine different patient groups and train a unified predictive model to eliminate the data selection bias. Towards robust learning, we further take advantage of indirect but fine-grained supervision signals to mutually calibrate with the noisy training labels. Additionally, a feature selector was co-trained with DeepTOF to select the most important features (i.e., answers/indicators that need to be collected) for inference, thus easing the use of DeepTOF during web-based real-world application. The proposed DeepTOF could bring great benefits to the rehabilitation of spine patients. Comprehensive experiments and analysis show that DeepTOF outperforms conventional solutions by a large margin.

Continuous glucose monitoring prediction is a crucial yet challenging task in precision medicine. This paper presents a novel neural ODE based approach for predicting continuous glucose monitoring (CGM) levels purely based on sporadic self-monitoring signals. We integrate the expert knowledge from physiological model into our model to improve the accuracy. Experiments on the real-world data demonstrate that our method outperforms other state-of-the-art methods on NRMSE metrics.