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Naijun Sha

dblp:31/5057 · DBLP profile ↗
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4ranked-venue papers
1as first author
0since 2021 · last 2015
0000-0001-6480-4233ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 4 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene expression analysis
microarray data analysis
0.112006
Bayesian variable selection for the analysis of microarray data with censored outcomes · Bioinform. 2006
Bioinformatics and computational biology
gene expression analysis
0.012003
Gene selection: a Bayesian variable selection approach · Bioinform. 2003
Bioinformatics and computational biology › gene expression analysis
gene selection
0.012003
Gene selection: a Bayesian variable selection approach · Bioinform. 2003
Bioinformatics and computational biology › cancer genomics
cancer classification
0.012003
Gene selection: a Bayesian variable selection approach · Bioinform. 2003
Bioinformatics and computational biology › gene expression analysis › gene expression classification
microarray classification
0.012003
Gene selection: a Bayesian variable selection approach · Bioinform. 2003

Methods — techniques the papers use, named apart from their topics

data augmentation · 0.1bayesian variable selection · 0.1accelerated failure time model · 0.1markov chain monte carlo · 0.0hierarchical bayesian model · 0.0bayesian mixture prior · 0.0
YearPublicationVenuePosition
2015 Parameter Inference in a Hybrid System With Masked Data
abstract
We consider statistical inference for two fundamental hybrid systems based on masked data: series-parallel, and parallel-series. Under constant, and linear hazard functions for component life, we present the maximum likelihood, and interval estimation of parameters of interest. Simulation studies are performed to demonstrate the efficiency of the methods.
Ronghua Wang, Naijun Sha, Beiqing Gu, Xiaoling Xu
IEEE Trans. Reliab.2
2012 Comparison Analysis of Efficiency for Step-Down and Step-Up Stress Accelerated Life Testing
abstract
We compare the practical efficiency of step-down and step-up stress accelerated life tests based on four different criteria through theoretical studies, and intensive Monte-Carlo simulations. We consider Weibull, and lognormal distributions for the lifetime of products at each stress level; and deal with type-I, and type-II censoring schemes. Through theoretical and simulation studies, we demonstrate that under a type-I censoring scheme, the step-down test plan results in a shorter mean failure time of testing units than that of the step-up stress accelerated life test. With type-II censoring, the step-down test is also preferred for products with long lifetimes, while the step-up procedure works better applied to units with early and occasional failures.
Ronghua Wang, Naijun Sha, Beiqing Gu, Xiaoling Xu
IEEE Trans. Reliab.2
2006 Bayesian variable selection for the analysis of microarray data with censored outcomes
abstract
MOTIVATION: A common task in microarray data analysis consists of identifying genes associated with a phenotype. When the outcomes of interest are censored time-to-event data, standard approaches assess the effect of genes by fitting univariate survival models. In this paper, we propose a Bayesian variable selection approach, which allows the identification of relevant markers by jointly assessing sets of genes. We consider accelerated failure time (AFT) models with log-normal and log-t distributional assumptions. A data augmentation approach is used to impute the failure times of censored observations and mixture priors are used for the regression coefficients to identify promising subsets of variables. The proposed method provides a unified procedure for the selection of relevant genes and the prediction of survivor functions. RESULTS: We demonstrate the performance of the method on simulated examples and on several microarray datasets. For the simulation study, we consider scenarios with large number of noisy variables and different degrees of correlation between the relevant and non-relevant (noisy) variables. We are able to identify the correct covariates and obtain good prediction of the survivor functions. For the microarray applications, some of our selected genes are known to be related to the diseases under study and a few are in agreement with findings from other researchers. AVAILABILITY: The Matlab code for implementing the Bayesian variable selection method may be obtained from the corresponding author. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Naijun Sha, Mahlet G. Tadesse, Marina Vannucci
Bioinform.1
2003 Gene selection: a Bayesian variable selection approach
abstract
UNLABELLED: Selection of significant genes via expression patterns is an important problem in microarray experiments. Owing to small sample size and the large number of variables (genes), the selection process can be unstable. This paper proposes a hierarchical Bayesian model for gene (variable) selection. We employ latent variables to specialize the model to a regression setting and uses a Bayesian mixture prior to perform the variable selection. We control the size of the model by assigning a prior distribution over the dimension (number of significant genes) of the model. The posterior distributions of the parameters are not in explicit form and we need to use a combination of truncated sampling and Markov Chain Monte Carlo (MCMC) based computation techniques to simulate the parameters from the posteriors. The Bayesian model is flexible enough to identify significant genes as well as to perform future predictions. The method is applied to cancer classification via cDNA microarrays where the genes BRCA1 and BRCA2 are associated with a hereditary disposition to breast cancer, and the method is used to identify a set of significant genes. The method is also applied successfully to the leukemia data. SUPPLEMENTARY INFORMATION: http://stat.tamu.edu/people/faculty/bmallick.html.
Kyeong Eun Lee, Naijun Sha, Edward R. Dougherty, Marina Vannucci, Bani K. Mallick
Bioinform.2