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Shannon P. Hilchey

dblp:311/2961 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2022
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems bioinformatics
pathway analysis		 0.612022
WikiNetworks: translating manually created biological pathways for topological analysis · Bioinform. 2022
Bioinformatics and computational biology › systems bioinformatics
pathway model curation		 0.212022
WikiNetworks: translating manually created biological pathways for topological analysis · Bioinform. 2022

Methods — techniques the papers use, named apart from their topics

network construction · 0.6
YearPublicationVenuePosition
2022 WikiNetworks: translating manually created biological pathways for topological analysis
abstract
SUMMARY: WikiPathways is a database of 2979 biological pathways across 31 species created using the drawing software PathVisio. Many of these pathways are not directly usable for network-based topological analyses due to differences in curation styles and drawings. We developed the WikiNetworks package to standardize and construct directed networks by combining geometric information and manual annotations from WikiPathways. WikiNetworks performs significantly better than existing tools. This enables the use of high-quality WikiPathways resource for network-based topological analysis of high-throughput data. AVAILABILITY AND IMPLEMENTATION: WikiNetworks is written in Python3 and is available on github.com/Thakar-Lab/wikinetworks and on PyPI. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Mukta G. Palshikar, Shannon P. Hilchey, Martin S. Zand, Juilee Thakar
 Bioinform.2