Demo Data from VLDB 2026 / reviewers in the wild / expert
Shiyi Du
dblp:312/3627
· DBLP profile ↗
3ranked-venue papers
2as first author
3since 2021 · last 2026
0009-0006-3445-2437ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 3 · 2 first-author · 3 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 first-author · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% | |
| Artificial intelligence
1 paper |
Deep learning architectures and training · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › sequence analysis
DNA language model |
1.0 | 1 | 2026 | CodonMoE: DNA language models for codon-dependent mRNA prediction · Bioinform. 2026 |
Machine learning › Deep learning architectures and training
mixture of experts |
0.3 | 1 | 2026 | CodonMoE: DNA language models for codon-dependent mRNA prediction · Bioinform. 2026 |
Methods — techniques the papers use, named apart from their topics
mixture of experts · 2.0adapter · 2.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | CodonMoE: DNA language models for codon-dependent mRNA predictionabstractMOTIVATION: Genomic language models (gLMs) face a fundamental efficiency challenge: one must either maintain separate specialized models for each biological modality (DNA and RNA) or develop large multimodal architectures. Both approaches impose significant computational burdens-modality-specific models require redundant infrastructure despite inherent biological connections, while multi-modal architectures demand increased parameter counts and extensive cross-modality pretraining. RESULTS: To address this limitation, we introduce CodonMoE (Adaptive Mixture of Codon Reformative Experts), a lightweight adapter that transforms DNA language models into effective RNA analyzers without RNA-specific pretraining. Our theoretical analysis establishes CodonMoE as a universal approximator at the codon level, capable of mapping arbitrary functions from codon sequences to codon-dependent RNA properties given sufficient expert capacity. Across four RNA prediction tasks spanning stability, expression, and regulation, DNA models augmented with CodonMoE significantly outperform their unmodified counterparts, with the HyenaDNA+CodonMoE series achieving state-of-the-art results using 80% fewer parameters than specialized RNA models. By maintaining sub-quadratic complexity while achieving superior performance, our approach provides a principled path toward unifying genomic language modeling, leveraging more abundant DNA data and reducing computational overhead while preserving modality-specific performance advantages. AVAILABILITY AND IMPLEMENTATION: Source code for the method and to reproduce the results is available at https://github.com/Kingsford-Group/CodonMoE. Shiyi Du, Litian Liang, Carl Kingsford |
Bioinform. | 1 |
| 2023 | Self-supervised anomaly detection, staging and segmentation for retinal images
Yiyue Li, Qicheng Lao, Qingbo Kang, Zekun Jiang, Shiyi Du, Shaoting Zhang 0001, Kang Li 0004 |
Medical Image Anal. | 5 |
| 2022 | Distilling Knowledge from Topological Representations for Pathological Complete Response Prediction
Shiyi Du, Qicheng Lao, Qingbo Kang, Yiyue Li, Zekun Jiang, Kang Li 0004 |
MICCAI (2) | 1 |