Biomedical event extraction, a cornerstone of information extraction, has increasingly attracted attention within the biomedical research community. Moreover, it is a highly complex task, which not only deals with many sub-tasks but also involves nested events. Currently, the research on biomedical event extraction, whether pipelined model or joint method, needs to be processed for each sub-task. The process of processing each sub-task one by one lead to the degradation of event extraction performance. In addition, most studies focus on extracting sentence-level events and ignore cross-sentence event information. To solve these problems, we simplify the process of event extraction, reduce the processing steps, and combine the two sub-tasks of relation extraction and argument combination as one sub-task. In addition, we consider document-level event extraction, which not only extracts cross-sentence events but also considers broader context information. Experimental results indicate that our novel approach outperforms prior studies. Additionally, the document-level event extraction model attains the top performance on the BioNLP’11 test data and achieves near-leading performance on the BioNLP’13 test data.

Dialogue Aspect-based Sentiment Quadruple (DiaASQ) is a newly-emergent task aiming to extract the sentiment quadruple (i.e., targets, aspects, opinions, and sentiments) from conversations. While showing promising performance, the prior DiaASQ approach unfortunately falls prey to the key crux of DiaASQ, including insufficient modeling of discourse features, and lacking quadruple extraction, which hinders further task improvement. To this end, we introduce a novel framework that not only capitalizes on comprehensive discourse feature modeling, but also captures the intrinsic interaction for optimal quadruple extraction. On the one hand, drawing upon multiple discourse features, our approach constructs a token-level heterogeneous graph and enhances token interactions through a heterogeneous attention network. We further propose a novel triadic scorer, strengthening weak token relations within a quadruple, thereby enhancing the cohesion of the quadruple extraction. Experimental results on the DiaASQ benchmark showcase that our model significantly outperforms existing baselines across both English and Chinese datasets. Our code is available at https://bit.ly/3v27pqA.

Empathetic response generation is a crucial task in natural language processing , enabling emotionally resonant machine–human interactions. In this paper, we introduce the InfRa ( In tegrating Discourse F eatures and R esponse A ssessment) model to address limitations in traditional methods for this task, such as the lack of deep dialogue comprehension and response control. InfRa integrates discourse features to augment structural dialogue understanding, with a novel edge pruning and mutual information learning module to further refine the representation. The model also employs a response evaluation module for dynamic optimization , ensuring emotional and semantic consistency between the generated response and its context . Our experiments demonstrate that InfRa outperforms existing baselines, reducing the Perplexity (PPL) score by approximately 9 points and excelling in all three fine-grained aspects of human evaluation. This research not only advances the development of empathetic chatbots but also provides valuable insights for broader text generation tasks.

Currently, biomedical event extraction has received considerable attention in various fields, including natural language processing, bioinformatics, and computational biomedicine. This has led to the emergence of numerous machine learning and deep learning models that have been proposed and applied to tackle this complex task. While existing models typically adopt an extraction-based approach, which requires breaking down the extraction of biomedical events into multiple subtasks for sequential processing, making it prone to cascading errors. This paper presents a novel approach by constructing a biomedical event generation model based on the framework of the pre-trained language model T5. We employ a sequence-to-sequence generation paradigm to obtain events, the model utilizes constrained decoding algorithm to guide sequence generation, and a curriculum learning algorithm for efficient model learning. To demonstrate the effectiveness of our model, we evaluate it on two public benchmark datasets, Genia 2011 and Genia 2013. Our model achieves superior performance, illustrating the effectiveness of generative modeling of biomedical events.

Event extraction (EE) is an essential task of information extraction, which aims to extract structured event information from unstructured text. Most prior work focuses on extracting flat events while neglecting overlapped or nested ones. A few models for overlapped and nested EE includes several successive stages to extract event triggers and arguments,which suffer from error propagation. Therefore, we design a simple yet effective tagging scheme and model to formulate EE as word-word relation recognition, called OneEE. The relations between trigger or argument words are simultaneously recognized in one stage with parallel grid tagging, thus yielding a very fast event extraction speed. The model is equipped with an adaptive event fusion module to generate event-aware representations and a distance-aware predictor to integrate relative distance information for word-word relation recognition, which are empirically demonstrated to be effective mechanisms. Experiments on 3 overlapped and nested EE benchmarks, namely FewFC, Genia11, and Genia13, show that OneEE achieves the state-of-the-art (SOTA) results. Moreover, the inference speed of OneEE is faster than those of baselines in the same condition, and can be further substantially improved since it supports parallel inference.

Relation Extraction (RE) is a fundamental task of information extraction, which has attracted a large amount of research attention.Previous studies focus on extracting the relations within a sentence or document, while currently researchers begin to explore cross-document RE.However, current cross-document RE methods directly utilize text snippets surrounding the target entities in multiple given documents, which brings considerable noisy and non-relevant sentences.Moreover, they utilize all the text paths in a document bag in a coarse-grained way, without considering the connections between these text paths.In this paper, we aim to address both of these shortages and push the stateof-the-art for cross-document RE.First, we focus on input construction for our RE model and propose an entity-based document-context filter to retain useful information in the given documents by using the bridge entities in the text paths.Second, we propose a cross-document RE model based on cross-path entity relation attention, which allows the entity relations across text paths to interact with each other.We compare our cross-document RE method with the state-of-the-art methods in the dataset CodRED.Our method outperforms them by at least 10% in F1, thus demonstrating its effectiveness.

Biomedicalevent extraction is an essential task in the biomedical research. Existing models suffer from the issue of low recall due to the large proportion of unrecognized events and inflexible event argument combination. To address this issue, we propose an end-to-end multi-task approach for biomedical event extraction. Our model is able to achieve balanced precision and recall with several nichetargeting designs. First, neural encoders with rich lexical and syntactic features are used and shared by multiple subtasks such as event trigger recognition and argument relation extraction, in order to enhance the generalizability of the model. Second, a novel auxiliary subtask is added to identify the proteins that participate in the events, which helps decreasing the challenge of mining event-related proteins from the large candidate space. Third, event argument combination is performed using a strong neural network rather than inflexible rules or templates, to further increase the recall, especially for complex nested events. To demonstrate the effectiveness of our model, we evaluate it on two widely-used biomedical event extraction datasets used in the BioNLP 2011 and 2013 shared tasks. Our model achieves the state-of-the-art results (63.15% and 55.67% in F1 score) by significantly improving the recalls (compared withDeepEvnetMine$_{SciBERT}$, 4.65% and 5.0%) on the two datasets. Further experiments and analyses show the effectiveness of our proposed features and modules in the model.