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Aitor Rementeria

dblp:33/1503 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2004
0000-0003-0478-1038ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › genomics › microbial genomics
bacterial genome analysis
0.012004
In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction · Bioinform. 2004
Bioinformatics and computational biology › sequence analysis
in silico PCR
0.012004
In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction · Bioinform. 2004

Methods — techniques the papers use, named apart from their topics

in silico simulation · 0.0
YearPublicationVenuePosition
2004 In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction
abstract
UNLABELLED: We have developed a website, www.in-silico.com, which runs a software program that performs three basic tasks in completely sequenced bacterial genomes by in silico analysis: PCR amplification, amplified fragment length polymorphism (AFLP-PCR) and endonuclease restriction. For PCR, after selection of the genome and introduction of primers, fragment size, DNA sequence and corresponding open reading frame (ORF) identity of the resulting PCR product is computed. Plasmids of sequenced species may be included in the analysis. Theoretical AFLP-PCR analyzes similar parameters, and includes a suggestion tool providing a list of commercial restriction enzyme pairs yielding up to 50 amplicons in the selected genome. Endonuclease restriction analysis of complete genomes and plasmids calculates the number of restriction sites for endonucleases in a given genome. If the number of fragments is 50 or fewer, pulsed field gel electrophoresis image and restriction maps are illustrated. Other tools that have been included in this site are ORF search by name and DNA to protein translation as well as restriction digestion of user-defined DNA sequences. AVAILABILITY: This is a new molecular biology resource freely available over the Internet at http://www.in-silico.com
Joseba Bikandi, Rosario San Millán, Aitor Rementeria, Javier Garaizar
Bioinform.3