Carlo De Donno

dblp:330/4882 · DBLP profile ↗
← Back
2ranked-venue papers
0as first author
2since 2021 · last 2025
0000-0002-9553-0121ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 2 · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%
Databases, data mining, and information retrieval
1 paper
Information retrieval · 100%
Artificial intelligence
1 paper
Trustworthy machine learning · 77% Representation and self-supervised learning · 23%

Topics — the 4 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
drug discovery
0.912025
OligoGym: Curated Datasets and Benchmarks for Oligonucleotide Drug Discovery · NeurIPS 2025
Information retrieval › evaluation
benchmark dataset
0.912025
OligoGym: Curated Datasets and Benchmarks for Oligonucleotide Drug Discovery · NeurIPS 2025
Machine learning › Trustworthy machine learning › causal machine learning
variational causal inference
0.712023
Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information · ICLR 2023
Machine learning › Representation and self-supervised learning › representation learning › structured representation learning
relational representation learning
0.212023
Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information · ICLR 2023

Methods — techniques the papers use, named apart from their topics

featurization · 1.7deep learning · 1.7classical machine learning · 1.7variational inference · 1.3causal inference · 1.3
YearPublicationVenuePosition
2025 OligoGym: Curated Datasets and Benchmarks for Oligonucleotide Drug Discovery
abstract
Oligonucleotide therapeutics offer great potential to address previously undruggable targets and enable personalized medicine. However, their progress is often hindered by insufficient safety and efficacy profiles. Predictive modeling and machine learning could significantly accelerate oligonucleotide drug discovery by identifying suboptimal compounds early on, but their application in this area lags behind other modalities. A key obstacle to the adoption of machine learning in the field is the scarcity of readily accessible and standardized datasets for model development, as data are often scattered across diverse experiments with inconsistent molecular representations. To overcome this challenge, we introduce OligoGym, a curated collection of standardized, machine learning-ready datasets encompassing various oligonucleotide therapeutic modalities and endpoints. We used OligoGym to benchmark diverse classical and deep learning methods, establishing performance baselines for each dataset across different featurization techniques, model configurations, and splitting strategies. Our work represents a crucial first step in creating a more unified framework for oligonucleotide therapeutic dataset generation and model training.
Rachapun Rotrattanadumrong, Carlo De Donno
NeurIPS2
2023 Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information
Robert A. Barton, Zichen Wang 0002, Vassilis N. Ioannidis, Carlo De Donno, Layne Price, Luis F. Voloch, George Karypis
ICLR5